Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RIM63_RS01780 Genome accession   NZ_CP133952
Coordinates   350932..351420 (+) Length   162 a.a.
NCBI ID   WP_012514998.1    Uniprot ID   A0AAW3GP39
Organism   Streptococcus equi subsp. zooepidemicus strain HT321     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 345932..356420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM63_RS01755 (RIM63_01755) - 346257..347312 (-) 1056 WP_317584528.1 LPXTG cell wall anchor domain-containing protein -
  RIM63_RS01760 (RIM63_01760) - 347530..347814 (-) 285 WP_317584530.1 hypothetical protein -
  RIM63_RS01765 (RIM63_01765) mutY 348098..349246 (-) 1149 WP_317584533.1 A/G-specific adenine glycosylase -
  RIM63_RS01770 (RIM63_01770) - 349335..349560 (+) 226 Protein_315 HicB family protein -
  RIM63_RS01775 (RIM63_01775) rpsF 350623..350913 (+) 291 WP_012514997.1 30S ribosomal protein S6 -
  RIM63_RS01780 (RIM63_01780) ssbA 350932..351420 (+) 489 WP_012514998.1 single-stranded DNA-binding protein Machinery gene
  RIM63_RS01785 (RIM63_01785) rpsR 351580..351819 (+) 240 WP_002983142.1 30S ribosomal protein S18 -
  RIM63_RS01790 (RIM63_01790) - 352087..352737 (-) 651 WP_301900089.1 DUF1129 domain-containing protein -
  RIM63_RS01795 (RIM63_01795) - 353002..353946 (-) 945 WP_014622324.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17765.60 Da        Isoelectric Point: 4.9008

>NTDB_id=877750 RIM63_RS01780 WP_012514998.1 350932..351420(+) (ssbA) [Streptococcus equi subsp. zooepidemicus strain HT321]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRAFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREASSSGSYGGGFNGSPAANSYSAPTQQTPNFGRDESPFGGSNPMDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=877750 RIM63_RS01780 WP_012514998.1 350932..351420(+) (ssbA) [Streptococcus equi subsp. zooepidemicus strain HT321]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAAGACGCAGAGCTTCGATACACTCCAAGTCAGGTGGCAGTTGC
TACGTTTACACTTGCTGTTAATCGCGCCTTTAAGAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAATTGTGTGATCT
GGCGGCAGCAGGCTGAGAATTTAGCTAACTGGGCCAAAAAGGGTGCCTTGATTGGGATTACAGGACGTATTCAGACCCGT
AACTACGAAAACCAACAGGGGCAGCGTGTGTATGTAACCGAGGTTGTTGCAGATAATTTCCAAATGCTGGAAAGTCGTGC
TACACGTGAGGCGAGCTCGTCTGGCTCATATGGTGGTGGCTTTAATGGCTCGCCGGCAGCCAATAGCTATTCAGCGCCTA
CTCAGCAAACACCTAACTTTGGTAGAGATGAAAGTCCATTTGGCGGCTCAAACCCAATGGATATTTCAGATGACGATCTT
CCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.322

100

0.605
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.464

69.136

0.377
  ssb Glaesserella parasuis strain SC1401

32.065

100

0.364