Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   RIM62_RS03425 Genome accession   NZ_CP133950
Coordinates   692382..693104 (+) Length   240 a.a.
NCBI ID   WP_043039157.1    Uniprot ID   A0AAX2LJU3
Organism   Streptococcus equi subsp. zooepidemicus strain ZHZ211     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 687382..698104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM62_RS03405 (RIM62_03405) - 688690..690111 (+) 1422 WP_012515972.1 glycoside hydrolase family 1 protein -
  RIM62_RS03410 (RIM62_03410) - 690297..691112 (-) 816 WP_165619473.1 TIGR03943 family putative permease subunit -
  RIM62_RS03415 (RIM62_03415) - 691112..692014 (-) 903 WP_021320980.1 permease -
  RIM62_RS03420 (RIM62_03420) - 692055..692210 (-) 156 WP_012515968.1 SPJ_0845 family protein -
  RIM62_RS03425 (RIM62_03425) vicR 692382..693104 (+) 723 WP_043039157.1 response regulator transcription factor Regulator
  RIM62_RS03430 (RIM62_03430) pnpS 693088..694413 (+) 1326 WP_165619474.1 two-component system histidine kinase PnpS -
  RIM62_RS03435 (RIM62_03435) - 694572..695444 (+) 873 WP_165619475.1 substrate-binding domain-containing protein -
  RIM62_RS03440 (RIM62_03440) pstC 695514..696377 (+) 864 WP_165619476.1 phosphate ABC transporter permease subunit PstC -
  RIM62_RS03445 (RIM62_03445) pstA 696370..697185 (+) 816 WP_021320978.1 phosphate ABC transporter permease PstA -
  RIM62_RS03450 (RIM62_03450) pstB 697187..697939 (+) 753 WP_165619477.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28083.53 Da        Isoelectric Point: 6.1653

>NTDB_id=877645 RIM62_RS03425 WP_043039157.1 692382..693104(+) (vicR) [Streptococcus equi subsp. zooepidemicus strain ZHZ211]
MTKRVLLVDDEEPILKLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIEVCKRLRAKGSKTPIMMV
SAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEAEISGDGEERREPFYTMSQLRLYPERHEVYKDKELLPL
TPKEYELLLYLMKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKNDRTS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=877645 RIM62_RS03425 WP_043039157.1 692382..693104(+) (vicR) [Streptococcus equi subsp. zooepidemicus strain ZHZ211]
ATGACAAAACGAGTATTATTAGTAGATGATGAGGAGCCTATCTTAAAGCTACTGGATTATCACTTGGCCAAGGAGGGCTT
TGTGACAGAGATGGTAACAGATGGCCGTACTGCCTTGGCATTAGCTGAAAGAGAACCTTATGATTTTATTGTGTTAGATA
TTATGCTGCCGCAATTAGACGGTATCGAGGTCTGCAAAAGGCTTCGTGCTAAGGGAAGCAAAACCCCAATTATGATGGTT
TCTGCTAAAAGTGATGAATTTGACAAGGTTTTGGCTTTGGAACTGGGGGCAGATGATTATGTGACCAAGCCCTTTAGTCC
TAGAGAATTATTAGCGCGTGTCAAGGCTATTTTAAGGCGTACTGAAGCAGAGATTTCTGGTGATGGTGAGGAGCGTCGTG
AGCCTTTTTATACGATGAGTCAATTGCGTCTGTACCCAGAGCGACATGAGGTCTATAAGGACAAGGAGCTATTGCCGTTA
ACCCCAAAGGAATATGAGCTACTGCTCTATCTCATGAAGCACCCTAATATGACCTTGACGCGTGAGCGGCTATTAGAGCG
TATCTGGGGTTATGACTTTGGCCAAGAAACACGTCTGGTAGACGTTCATATTGGCAAGCTCAGAGAAAAAATTGAGGACA
ATCCTAAGGCGCCTCAGTATATTCAAACCATTCGCGGCTATGGATACAAATTTAAGGAGCTAAAGAATGATAGGACATCT
TAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(158-231)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

52.155

96.667

0.504
  micA Streptococcus pneumoniae Cp1015

50

95.833

0.479
  covR Lactococcus lactis subsp. lactis strain DGCC12653

43.59

97.5

0.425
  covR Streptococcus salivarius strain HSISS4

40.343

97.083

0.392