Detailed information NTG0877617

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: RIM62_RS00695
• Genome accession: NZ_CP133950
• Coordinates: 118854..119888 (+)
• Length: 344 a.a.
• NCBI ID: WP_228273970.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain ZHZ211
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 113854..124888

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RIM62_RS00675 (RIM62_00675)	-	114241..114606 (+)	366	WP_165619319.1	DUF1033 family protein	-
RIM62_RS00680 (RIM62_00680)	-	115151..117154 (+)	2004	WP_012677231.1	DUF1430 domain-containing protein	-
RIM62_RS00685 (RIM62_00685)	-	117156..117803 (+)	648	WP_012677232.1	ATP-binding cassette domain-containing protein	-
RIM62_RS00690 (RIM62_00690)	comGA/cglA	117983..118921 (+)	939	WP_012677233.1	competence type IV pilus ATPase ComGA	Machinery gene
RIM62_RS00695 (RIM62_00695)	comYB	118854..119888 (+)	1035	WP_228273970.1	competence type IV pilus assembly protein ComGB	Machinery gene
RIM62_RS00700 (RIM62_00700)	comGC/cglC	119889..120212 (+)	324	WP_012677235.1	competence type IV pilus major pilin ComGC	Machinery gene
RIM62_RS00705 (RIM62_00705)	comGD	120190..120615 (+)	426	WP_012514783.1	competence type IV pilus minor pilin ComGD	-
RIM62_RS00710 (RIM62_00710)	comGE	120620..120862 (+)	243	WP_012677236.1	competence type IV pilus minor pilin ComGE	-
RIM62_RS00715 (RIM62_00715)	comYF	120849..121283 (+)	435	WP_115266549.1	competence type IV pilus minor pilin ComGF	Machinery gene
RIM62_RS00720 (RIM62_00720)	comGG	121261..121623 (+)	363	WP_115266550.1	competence type IV pilus minor pilin ComGG	-
RIM62_RS00725 (RIM62_00725)	comYH	121685..122638 (+)	954	WP_165619320.1	class I SAM-dependent methyltransferase	Machinery gene
RIM62_RS00730 (RIM62_00730)	-	122698..123900 (+)	1203	WP_115266552.1	acetate kinase	-
RIM62_RS00735 (RIM62_00735)	-	124270..124884 (-)	615	WP_042669829.1	hypothetical protein	-

Sequence

Protein

• Length: 344 a.a.
• Molecular weight: 39473.73 Da
• Isoelectric Point: 9.4455

>NTDB_id=877617 RIM62_RS00695 WP_228273970.1 118854..119888(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain ZHZ211]
MISFLQRDISIPSRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLPPIYVANMEASLLKGNGLADMLAAL
GYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLGFLVVIMLGLRHYLIPQLESQNVLTDLLL
HLPHYFLGFCLLLLSLIGSFYLYARSCSRLRLFSQLSYYPIIGALLRQYLTAYYAREWGNLIGQGLELITILEMMSNEKS
QLMRELAKDIKQGLLAGQSFHQRVAAYPFFKKELSLMIEYGDIKSKLGRELDIYAQESWETFFSQLNRATQWIQPIIFLL
VAVIIVMIYAAILLPIYQHMGDVF

Nucleotide

• Length: 1035 bp

>NTDB_id=877617 RIM62_RS00695 WP_228273970.1 118854..119888(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain ZHZ211]
TTGATCAGCTTCTTGCAGAGGGACATCTCAATACCAAGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAAGAAAA
GCTTATCCAATTGCTCTATAACCTATTGTCTAACGGTTTTAATTTAACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGC
TCTTGCCACCAATCTATGTTGCAAATATGGAAGCAAGCCTATTAAAGGGCAATGGCCTTGCTGATATGCTGGCAGCCTTA
GGCTACTCTGATGCTGTCATGACACAAATTAATCTGGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCA
GGATTATCTGAGTCAATTTCGCCAAATCAAGCGAAAGACCATCGAGGCAGTCACTTATCCGATCATACTTTTAGGTTTTT
TAGTGGTTATCATGCTAGGCTTGCGGCATTACCTAATCCCTCAGCTAGAGAGTCAAAATGTCTTGACTGACTTGTTGCTT
CATTTGCCTCATTATTTCTTAGGCTTTTGTCTGCTTTTGCTGTCGCTGATTGGCTCTTTTTACCTATATGCCAGGTCCTG
TAGCAGGCTAAGGCTATTTAGTCAGCTGAGCTATTATCCTATCATTGGAGCCTTATTGCGGCAATATTTGACAGCCTACT
ATGCTAGAGAATGGGGCAACCTCATCGGACAAGGCTTAGAATTAATCACCATTTTAGAGATGATGTCAAACGAAAAGTCA
CAGCTCATGCGAGAGCTTGCCAAGGATATCAAGCAGGGCCTGCTAGCTGGCCAATCCTTTCATCAAAGGGTTGCAGCTTA
TCCCTTTTTTAAAAAGGAGCTGAGCCTAATGATTGAATATGGCGACATCAAATCAAAGCTTGGTCGGGAGCTAGATATCT
ATGCCCAAGAAAGCTGGGAGACCTTTTTTAGTCAGCTCAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTACTG
GTTGCTGTGATTATTGTGATGATTTATGCTGCTATTTTATTACCAATTTATCAACATATGGGAGATGTTTTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (29-147)

• Type II secretion system (T2SS), protein F (T2SSF) (215-335)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	54.572	98.547	0.538
comYB	Streptococcus mutans UA159	54.572	98.547	0.538
comYB	Streptococcus gordonii str. Challis substr. CH1	52.647	98.837	0.52
comGB/cglB	Streptococcus mitis SK321	48.649	96.802	0.471
comGB/cglB	Streptococcus mitis NCTC 12261	48.503	97.093	0.471
comGB/cglB	Streptococcus pneumoniae Rx1	48.348	96.802	0.468
comGB/cglB	Streptococcus pneumoniae D39	48.348	96.802	0.468
comGB/cglB	Streptococcus pneumoniae R6	48.348	96.802	0.468
comGB/cglB	Streptococcus pneumoniae TIGR4	48.348	96.802	0.468
comGB	Lactococcus lactis subsp. cremoris KW2	46.018	98.547	0.453