Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RHN62_RS07190 Genome accession   NZ_CP133937
Coordinates   1539067..1539567 (+) Length   166 a.a.
NCBI ID   WP_005725039.1    Uniprot ID   A0A379BD60
Organism   Pasteurella multocida strain AKS2021-HT3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1534067..1544567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHN62_RS07175 rlmB 1534610..1535347 (+) 738 WP_005725044.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RHN62_RS07180 sodC 1535433..1535993 (-) 561 WP_241951160.1 superoxide dismutase [Cu-Zn] SodC -
  RHN62_RS07185 uvrA 1536064..1538895 (-) 2832 WP_241951161.1 excinuclease ABC subunit UvrA -
  RHN62_RS07190 ssb 1539067..1539567 (+) 501 WP_005725039.1 single-stranded DNA-binding protein Machinery gene
  RHN62_RS07195 - 1539680..1540813 (-) 1134 WP_241951162.1 patatin-like phospholipase family protein -
  RHN62_RS07200 folD 1540941..1541795 (-) 855 WP_241951163.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  RHN62_RS07215 - 1542438..1542857 (+) 420 WP_241951164.1 DUF417 family protein -
  RHN62_RS07220 lipA 1542935..1543897 (-) 963 WP_005719422.1 lipoyl synthase -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18657.68 Da        Isoelectric Point: 5.3353

>NTDB_id=877582 RHN62_RS07190 WP_005725039.1 1539067..1539567(+) (ssb) [Pasteurella multocida strain AKS2021-HT3]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=877582 RHN62_RS07190 WP_005725039.1 1539067..1539567(+) (ssb) [Pasteurella multocida strain AKS2021-HT3]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACCACTGAAATTCAAGGCGACGTGTTACAGAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCACCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGCACAACCTTCTCGTCCAGCGACAAAACCCGCCCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A379BD60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47