Detailed information NTG0877012

Bioinformatically predicted

Overview

• Name: comE
• Type: Machinery gene
• Locus tag: RHO09_RS10360
• Genome accession: NZ_CP133810
• Coordinates: 2230111..2231445 (+)
• Length: 444 a.a.
• NCBI ID: WP_310850981.1
• Uniprot ID: -
• Organism: Pasteurella multocida strain W22-3735.1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2225111..2236445

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHO09_RS10335 (RHO09_10335)	-	2225187..2227748 (-)	2562	WP_005757394.1	penicillin-binding protein 1A	-
RHO09_RS10340 (RHO09_10340)	pilM	2227884..2228657 (+)	774	WP_310850980.1	pilus assembly protein PilM	-
RHO09_RS10345 (RHO09_10345)	-	2228697..2229212 (+)	516	WP_046333758.1	competence protein ComB	-
RHO09_RS10350 (RHO09_10350)	-	2229212..2229736 (+)	525	WP_005751903.1	hypothetical protein	-
RHO09_RS10355 (RHO09_10355)	-	2229739..2230101 (+)	363	WP_005723703.1	pilus assembly protein PilP	-
RHO09_RS10360 (RHO09_10360)	comE	2230111..2231445 (+)	1335	WP_310850981.1	type IV pilus secretin PilQ	Machinery gene
RHO09_RS10365 (RHO09_10365)	aroK	2231628..2232155 (+)	528	WP_005717623.1	shikimate kinase AroK	-
RHO09_RS10370 (RHO09_10370)	aroB	2232172..2233260 (+)	1089	WP_310850982.1	3-dehydroquinate synthase	-
RHO09_RS10375 (RHO09_10375)	-	2233264..2234169 (+)	906	WP_005723696.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	-
RHO09_RS10380 (RHO09_10380)	-	2234216..2234521 (-)	306	WP_005723691.1	DUF721 domain-containing protein	-
RHO09_RS10385 (RHO09_10385)	secM	2234614..2234925 (+)	312	WP_005723689.1	secA translation cis-regulator SecM	-

Sequence

Protein

• Length: 444 a.a.
• Molecular weight: 49240.64 Da
• Isoelectric Point: 8.0315

>NTDB_id=877012 RHO09_RS10360 WP_310850981.1 2230111..2231445(+) (comE) [Pasteurella multocida strain W22-3735.1]
MWRAFRKISFVYFLCGVAYVGSSQAQDAEHFYLRLKQAPLVEMLQYLALQQHQDLLIDDHLEGTLSLQMKKTTFEKCLQS
IARMKQLELHQEGKSYYLTSPSGVAANDTHHPTSLMTSSIKLHFAKAAEVVKSLTSGQGSLLSVGGSLSFDERTNLLLIQ
DEPQSVQRIKALVAEMDKPIEQIAIEARIVTMTDESLQELGVRWGLFQATEQAHTIAGSLAANGFSNIENQLNVNFSTNS
APVGSIALQLAKINGRLLDLELTALEREKHIEIIASPRLLTTNKKSASIKQGTEIPYVMKRGKDKSESVEFREAVLGLDV
TPHISKDNTILLDLLITQNTLGAPVVYDKGEIVSIDKQEINTQVIAQDGETIVLGGVFHDTMTKGVNKVPLLGDLPLLKH
VFSQKTERHQKRELVIFVTPHIIKPSQGSPEQKTTRVKKSAKSR

Nucleotide

• Length: 1335 bp

>NTDB_id=877012 RHO09_RS10360 WP_310850981.1 2230111..2231445(+) (comE) [Pasteurella multocida strain W22-3735.1]
ATGTGGCGAGCATTCAGAAAAATATCTTTTGTGTACTTTTTATGTGGGGTTGCTTATGTTGGAAGTAGTCAAGCACAAGA
CGCAGAACATTTTTATTTACGTTTAAAACAAGCGCCTTTAGTCGAAATGTTACAGTATTTAGCATTGCAACAACATCAGG
ATTTGTTAATCGATGATCATTTAGAGGGCACATTATCATTACAGATGAAAAAGACAACCTTTGAGAAATGTTTACAGTCG
ATTGCAAGAATGAAACAACTTGAGTTACATCAAGAAGGAAAATCCTATTATTTAACTTCCCCTTCAGGTGTTGCAGCAAA
CGATACTCATCATCCTACGTCATTGATGACATCTTCAATAAAATTGCATTTTGCTAAAGCCGCAGAGGTGGTGAAATCTT
TAACTTCAGGGCAGGGAAGTTTACTTTCTGTCGGGGGGAGTTTGAGTTTTGATGAGCGGACTAATTTACTGCTGATTCAG
GATGAACCGCAATCAGTACAGCGTATTAAAGCATTAGTAGCAGAAATGGATAAACCCATTGAACAAATTGCGATCGAAGC
TAGGATTGTGACGATGACAGACGAAAGTTTGCAGGAACTTGGTGTAAGATGGGGGCTATTTCAAGCAACAGAACAGGCAC
ATACTATTGCAGGGAGTTTAGCCGCGAACGGCTTTTCGAATATAGAAAACCAATTAAATGTGAATTTCTCGACCAATAGT
GCACCTGTTGGTTCCATCGCCTTACAGTTGGCGAAAATAAATGGTCGATTATTAGACTTGGAATTAACTGCCTTGGAGCG
AGAAAAGCATATTGAGATTATTGCGAGTCCTCGTTTATTAACAACGAATAAAAAAAGTGCCAGTATCAAACAAGGGACGG
AAATTCCTTATGTGATGAAACGGGGAAAAGATAAAAGCGAATCGGTGGAATTTCGAGAAGCTGTATTGGGTTTAGATGTG
ACACCGCATATCTCAAAAGACAACACGATTTTATTAGATTTATTGATTACACAAAATACATTAGGTGCACCGGTAGTGTA
TGATAAAGGCGAAATTGTTTCGATCGATAAACAGGAAATCAATACTCAAGTCATCGCTCAAGATGGTGAAACCATCGTTT
TAGGTGGGGTGTTTCATGATACGATGACAAAGGGAGTCAATAAAGTACCACTACTAGGGGATTTGCCTTTGCTTAAACAT
GTGTTTAGCCAGAAAACTGAACGTCATCAAAAGCGGGAATTAGTGATTTTTGTCACGCCTCATATTATCAAACCTAGCCA
AGGTTCGCCTGAACAAAAAACAACAAGAGTTAAAAAATCTGCAAAATCGAGGTGA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (264-424)

• Bacterial type II/III secretion system short domain (Secretin_N) (119-182)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comE	Haemophilus influenzae Rd KW20	62.269	97.297	0.606
comE	Haemophilus influenzae 86-028NP	61.574	97.297	0.599
comE	Glaesserella parasuis strain SC1401	49.192	97.523	0.48
pilQ	Vibrio campbellii strain DS40M4	39.286	94.595	0.372
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	39.563	92.793	0.367
pilQ	Vibrio cholerae strain A1552	39.563	92.793	0.367