Detailed information NTG0876991

Bioinformatically predicted

Overview

• Name: comE
• Type: Machinery gene
• Locus tag: RHO08_RS10395
• Genome accession: NZ_CP133809
• Coordinates: 2235030..2236364 (+)
• Length: 444 a.a.
• NCBI ID: WP_061406404.1
• Uniprot ID: -
• Organism: Pasteurella multocida strain W22-979.1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2230030..2241364

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHO08_RS10370 (RHO08_10370)	-	2230106..2232667 (-)	2562	WP_005757394.1	penicillin-binding protein 1A	-
RHO08_RS10375 (RHO08_10375)	-	2232803..2233576 (+)	774	WP_046333757.1	pilus assembly protein PilM	-
RHO08_RS10380 (RHO08_10380)	-	2233616..2234131 (+)	516	WP_046333758.1	competence protein ComB	-
RHO08_RS10385 (RHO08_10385)	-	2234131..2234655 (+)	525	WP_005754754.1	hypothetical protein	-
RHO08_RS10390 (RHO08_10390)	-	2234658..2235020 (+)	363	WP_005748555.1	pilus assembly protein PilP	-
RHO08_RS10395 (RHO08_10395)	comE	2235030..2236364 (+)	1335	WP_061406404.1	type IV pilus secretin PilQ	Machinery gene
RHO08_RS10400 (RHO08_10400)	aroK	2236547..2237074 (+)	528	WP_005717623.1	shikimate kinase AroK	-
RHO08_RS10405 (RHO08_10405)	aroB	2237091..2238179 (+)	1089	WP_310827041.1	3-dehydroquinate synthase	-
RHO08_RS10410 (RHO08_10410)	-	2238183..2239088 (+)	906	WP_005723696.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	-
RHO08_RS10415 (RHO08_10415)	-	2239135..2239440 (-)	306	WP_005723691.1	DUF721 domain-containing protein	-
RHO08_RS10420 (RHO08_10420)	secM	2239533..2239844 (+)	312	WP_005723689.1	secA translation cis-regulator SecM	-

Sequence

Protein

• Length: 444 a.a.
• Molecular weight: 49240.64 Da
• Isoelectric Point: 8.0315

>NTDB_id=876991 RHO08_RS10395 WP_061406404.1 2235030..2236364(+) (comE) [Pasteurella multocida strain W22-979.1]
MWRAFRKISFVYFLCGVAYVGSSQAQDAEHFYLRLKQAPLVEMLQYLALQQHQDLLIDDHLEGTLSLQMKKTTFEKCLQS
IARMKQLELHQEGKSYYLTSPSGVAANDTHHPTSLMTSSIKLHFAKAAEVVKSLTSGQGSLLSVGGSLSFDERTNLLLIQ
DEPQSIQRIKALVAEMDKPIEQIAIEARIVTMTDESLQELGVRWGLFQATEQAHTIAGSLAANGFSNIENQLNVNFSTNS
APVGSIALQLAKINGRLLDLELTALEREKHIEIIASPRLLTTNKKSASIKQGTEIPYVMKRGKDKSESVEFREAVLGLDV
TPHISKDNTILLDLLITQNTLGAPVVYDKGEIVSIDKQEINTQVVAQDGETIVLGGVFHDTMTKGVNKVPLLGDLPLLKH
VFSQKTERHQKRELVIFVTPHIIKPSQGSPEQKTTRVKKSAKSR

Nucleotide

• Length: 1335 bp

>NTDB_id=876991 RHO08_RS10395 WP_061406404.1 2235030..2236364(+) (comE) [Pasteurella multocida strain W22-979.1]
ATGTGGCGAGCATTCAGAAAAATATCTTTTGTGTACTTTTTATGTGGGGTTGCTTATGTTGGAAGTAGTCAAGCACAAGA
CGCAGAACATTTTTATTTACGTTTAAAACAAGCGCCTTTAGTCGAAATGTTACAGTATTTAGCATTGCAACAACATCAGG
ATTTGTTAATCGATGATCATTTAGAGGGCACATTATCATTACAGATGAAAAAGACAACCTTTGAGAAATGTTTACAGTCG
ATTGCAAGAATGAAACAACTTGAGTTACATCAAGAAGGAAAATCCTATTATTTAACTTCCCCTTCAGGTGTTGCAGCAAA
CGATACTCATCATCCTACGTCATTGATGACATCTTCAATAAAATTGCATTTTGCCAAAGCCGCAGAGGTGGTGAAATCTT
TAACTTCAGGGCAGGGAAGTTTACTTTCTGTCGGGGGGAGTTTGAGTTTTGATGAGCGGACTAATTTACTGCTGATTCAG
GATGAACCGCAATCAATACAGCGTATTAAAGCATTAGTAGCAGAGATGGATAAACCCATTGAACAAATTGCGATCGAAGC
TAGGATTGTGACGATGACAGACGAAAGTTTGCAGGAACTTGGTGTAAGATGGGGGCTATTTCAAGCAACAGAACAGGCAC
ATACTATTGCAGGGAGTTTAGCCGCGAACGGCTTTTCGAATATAGAAAACCAATTAAATGTGAATTTCTCGACCAATAGT
GCACCTGTTGGTTCCATCGCCTTACAGTTGGCGAAAATAAATGGTCGATTATTAGACTTGGAATTAACTGCCTTGGAGCG
AGAAAAGCATATTGAGATTATTGCGAGTCCTCGTTTATTAACAACGAATAAAAAAAGTGCCAGTATCAAACAAGGGACGG
AAATTCCTTATGTGATGAAACGGGGAAAAGATAAAAGCGAATCGGTGGAATTTCGAGAAGCTGTATTAGGTTTAGATGTG
ACACCGCATATCTCAAAAGACAACACGATTTTATTAGATTTATTGATTACACAAAATACATTAGGTGCACCGGTAGTGTA
TGATAAAGGCGAAATTGTTTCGATCGATAAACAGGAAATCAATACTCAAGTCGTCGCTCAAGATGGTGAAACCATCGTTT
TAGGTGGGGTGTTTCATGATACGATGACAAAGGGAGTCAATAAAGTACCACTACTAGGGGATTTGCCTTTGCTTAAACAT
GTGTTTAGCCAGAAAACTGAACGTCATCAAAAGCGGGAATTAGTGATTTTTGTCACTCCTCATATTATCAAACCTAGCCA
AGGTTCGCCTGAACAAAAAACAACAAGAGTTAAAAAATCTGCAAAATCAAGGTGA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (264-424)

• Bacterial type II/III secretion system short domain (Secretin_N) (119-182)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comE	Haemophilus influenzae Rd KW20	62.037	97.297	0.604
comE	Haemophilus influenzae 86-028NP	61.343	97.297	0.597
comE	Glaesserella parasuis strain SC1401	48.961	97.523	0.477
pilQ	Vibrio campbellii strain DS40M4	39.524	94.595	0.374
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	39.806	92.793	0.369
pilQ	Vibrio cholerae strain A1552	39.806	92.793	0.369