Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RHO08_RS06475 Genome accession   NZ_CP133809
Coordinates   1439256..1439756 (+) Length   166 a.a.
NCBI ID   WP_005719438.1    Uniprot ID   A0A9X3URY5
Organism   Pasteurella multocida strain W22-979.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1434256..1444756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHO08_RS06460 (RHO08_06460) rlmB 1434799..1435536 (+) 738 WP_005725044.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RHO08_RS06465 (RHO08_06465) sodC 1435622..1436182 (-) 561 WP_005725042.1 superoxide dismutase family protein -
  RHO08_RS06470 (RHO08_06470) uvrA 1436253..1439084 (-) 2832 WP_010907420.1 excinuclease ABC subunit UvrA -
  RHO08_RS06475 (RHO08_06475) ssb 1439256..1439756 (+) 501 WP_005719438.1 single-stranded DNA-binding protein Machinery gene
  RHO08_RS06480 (RHO08_06480) - 1439906..1441186 (+) 1281 WP_123956069.1 site-specific integrase -
  RHO08_RS06485 (RHO08_06485) - 1441173..1442693 (+) 1521 WP_249984483.1 site-specific integrase -
  RHO08_RS06490 (RHO08_06490) - 1442696..1444732 (+) 2037 WP_310825955.1 integrase -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18673.68 Da        Isoelectric Point: 5.3353

>NTDB_id=876982 RHO08_RS06475 WP_005719438.1 1439256..1439756(+) (ssb) [Pasteurella multocida strain W22-979.1]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTASPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=876982 RHO08_RS06475 WP_005719438.1 1439256..1439756(+) (ssb) [Pasteurella multocida strain W22-979.1]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAGGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGACCGCTACACTACCGAGATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTTCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGCGCAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47