Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RHO06_RS06805 Genome accession   NZ_CP133807
Coordinates   1482261..1482761 (+) Length   166 a.a.
NCBI ID   WP_010907419.1    Uniprot ID   -
Organism   Pasteurella multocida strain W22-2894-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1477261..1487761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHO06_RS06790 (RHO06_06790) rlmB 1477804..1478541 (+) 738 WP_005725044.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RHO06_RS06795 (RHO06_06795) sodC 1478627..1479187 (-) 561 WP_010907421.1 superoxide dismutase family protein -
  RHO06_RS06800 (RHO06_06800) uvrA 1479258..1482089 (-) 2832 WP_010907420.1 excinuclease ABC subunit UvrA -
  RHO06_RS06805 (RHO06_06805) ssb 1482261..1482761 (+) 501 WP_010907419.1 single-stranded DNA-binding protein Machinery gene
  RHO06_RS06810 (RHO06_06810) folD 1483268..1484122 (-) 855 WP_005725034.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  RHO06_RS06825 (RHO06_06825) - 1484765..1485184 (+) 420 WP_005719426.1 DUF417 family protein -
  RHO06_RS06830 (RHO06_06830) lipA 1485262..1486224 (-) 963 WP_005719422.1 lipoyl synthase -
  RHO06_RS06835 (RHO06_06835) lipB 1486289..1486945 (-) 657 WP_010907404.1 lipoyl(octanoyl) transferase LipB -
  RHO06_RS06840 (RHO06_06840) ybeD 1486952..1487248 (-) 297 WP_005719420.1 DUF493 family protein YbeD -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18687.70 Da        Isoelectric Point: 5.3353

>NTDB_id=876939 RHO06_RS06805 WP_010907419.1 1482261..1482761(+) (ssb) [Pasteurella multocida strain W22-2894-7]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGSYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=876939 RHO06_RS06805 WP_010907419.1 1482261..1482761(+) (ssb) [Pasteurella multocida strain W22-2894-7]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAGGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACTACCGAAATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTAGCTACGGTGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

68.681

100

0.753
  ssb Vibrio cholerae strain A1552

54.144

100

0.59
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47