Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | RF668_RS07460 | Genome accession | NZ_CP133787 |
| Coordinates | 1443411..1443911 (+) | Length | 166 a.a. |
| NCBI ID | WP_309558437.1 | Uniprot ID | A0AAX4AFB4 |
| Organism | Lactococcus cremoris strain KCKM 0438 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1436457..1482764 | 1443411..1443911 | within | 0 |
Gene organization within MGE regions
Location: 1436457..1482764
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RF668_RS07405 (RF668_07405) | - | 1436457..1437596 (-) | 1140 | WP_309558420.1 | site-specific integrase | - |
| RF668_RS07410 (RF668_07410) | - | 1437718..1438569 (-) | 852 | WP_309558421.1 | CD20-like domain-containing protein | - |
| RF668_RS07415 (RF668_07415) | - | 1438629..1439024 (-) | 396 | WP_052750642.1 | hypothetical protein | - |
| RF668_RS07420 (RF668_07420) | - | 1439034..1439390 (-) | 357 | WP_046782339.1 | XRE family transcriptional regulator | - |
| RF668_RS07425 (RF668_07425) | - | 1439681..1439911 (+) | 231 | WP_011676017.1 | hypothetical protein | - |
| RF668_RS07430 (RF668_07430) | - | 1439926..1440669 (+) | 744 | WP_309558428.1 | ORF6C domain-containing protein | - |
| RF668_RS07435 (RF668_07435) | - | 1440683..1441021 (+) | 339 | WP_309558430.1 | hypothetical protein | - |
| RF668_RS07440 (RF668_07440) | - | 1441101..1441349 (+) | 249 | WP_309558433.1 | hypothetical protein | - |
| RF668_RS07445 (RF668_07445) | - | 1441346..1441522 (+) | 177 | WP_309558434.1 | putative transcriptional regulator | - |
| RF668_RS07450 (RF668_07450) | bet | 1441627..1442364 (+) | 738 | WP_309558435.1 | phage recombination protein Bet | - |
| RF668_RS07455 (RF668_07455) | - | 1442366..1443421 (+) | 1056 | WP_309558436.1 | DUF1351 domain-containing protein | - |
| RF668_RS07460 (RF668_07460) | ssb | 1443411..1443911 (+) | 501 | WP_309558437.1 | single-stranded DNA-binding protein | Machinery gene |
| RF668_RS07465 (RF668_07465) | - | 1444036..1444818 (+) | 783 | WP_023189114.1 | phage replisome organiser protein | - |
| RF668_RS07470 (RF668_07470) | - | 1444818..1445543 (+) | 726 | WP_309558443.1 | hypothetical protein | - |
| RF668_RS07475 (RF668_07475) | - | 1445540..1445929 (+) | 390 | WP_309558444.1 | RusA family crossover junction endodeoxyribonuclease | - |
| RF668_RS07480 (RF668_07480) | - | 1445932..1446171 (+) | 240 | WP_309558446.1 | DUF1031 family protein | - |
| RF668_RS07485 (RF668_07485) | - | 1446280..1446804 (+) | 525 | WP_309558448.1 | hypothetical protein | - |
| RF668_RS07490 (RF668_07490) | - | 1446816..1447013 (+) | 198 | WP_011835825.1 | DUF1125 domain-containing protein | - |
| RF668_RS07495 (RF668_07495) | - | 1447010..1447189 (+) | 180 | WP_043991166.1 | hypothetical protein | - |
| RF668_RS07500 (RF668_07500) | - | 1447182..1447781 (+) | 600 | WP_309558451.1 | DUF1642 domain-containing protein | - |
| RF668_RS07505 (RF668_07505) | - | 1447778..1447906 (+) | 129 | WP_309558453.1 | hypothetical protein | - |
| RF668_RS07510 (RF668_07510) | dut | 1447922..1448341 (+) | 420 | WP_309558455.1 | dUTP diphosphatase | - |
| RF668_RS07515 (RF668_07515) | - | 1448338..1448499 (+) | 162 | WP_309558457.1 | hypothetical protein | - |
| RF668_RS07520 (RF668_07520) | - | 1448501..1448800 (+) | 300 | WP_309558459.1 | hypothetical protein | - |
| RF668_RS07525 (RF668_07525) | - | 1448822..1448986 (+) | 165 | WP_010905701.1 | hypothetical protein | - |
| RF668_RS07530 (RF668_07530) | - | 1449033..1449266 (+) | 234 | WP_309558463.1 | hypothetical protein | - |
| RF668_RS07535 (RF668_07535) | - | 1449272..1449424 (+) | 153 | WP_309558465.1 | DUF1660 family phage protein | - |
| RF668_RS07540 (RF668_07540) | - | 1449424..1449600 (+) | 177 | WP_240819312.1 | hypothetical protein | - |
| RF668_RS07545 (RF668_07545) | - | 1450237..1450440 (+) | 204 | WP_270329675.1 | hypothetical protein | - |
| RF668_RS07550 (RF668_07550) | - | 1450520..1450942 (+) | 423 | WP_063282440.1 | RinA family protein | - |
| RF668_RS07555 (RF668_07555) | - | 1451186..1451698 (+) | 513 | WP_021722218.1 | terminase small subunit | - |
| RF668_RS07560 (RF668_07560) | - | 1451688..1452923 (+) | 1236 | WP_240246932.1 | PBSX family phage terminase large subunit | - |
| RF668_RS07565 (RF668_07565) | - | 1452932..1454440 (+) | 1509 | WP_309558468.1 | phage portal protein | - |
| RF668_RS07570 (RF668_07570) | - | 1454397..1454573 (+) | 177 | WP_309558469.1 | hypothetical protein | - |
| RF668_RS07575 (RF668_07575) | - | 1454615..1454845 (+) | 231 | WP_309558471.1 | hypothetical protein | - |
| RF668_RS07580 (RF668_07580) | - | 1454842..1455129 (+) | 288 | WP_043735348.1 | ribosomal-processing cysteine protease Prp | - |
| RF668_RS07585 (RF668_07585) | - | 1455135..1456241 (+) | 1107 | WP_309558473.1 | minor capsid protein | - |
| RF668_RS07590 (RF668_07590) | - | 1456406..1457062 (+) | 657 | WP_043735806.1 | DUF4355 domain-containing protein | - |
| RF668_RS07595 (RF668_07595) | - | 1457075..1458193 (+) | 1119 | WP_309558474.1 | Ig-like domain-containing protein | - |
| RF668_RS07600 (RF668_07600) | - | 1458214..1458546 (+) | 333 | WP_043735342.1 | phage head-tail connector protein | - |
| RF668_RS07605 (RF668_07605) | - | 1458527..1458880 (+) | 354 | WP_309558475.1 | hypothetical protein | - |
| RF668_RS07610 (RF668_07610) | - | 1458864..1459412 (+) | 549 | WP_014024892.1 | hypothetical protein | - |
| RF668_RS07615 (RF668_07615) | - | 1459412..1459774 (+) | 363 | WP_014024891.1 | hypothetical protein | - |
| RF668_RS07620 (RF668_07620) | - | 1459787..1460212 (+) | 426 | WP_309558478.1 | phage tail tube protein | - |
| RF668_RS07625 (RF668_07625) | - | 1460285..1460695 (+) | 411 | WP_309558480.1 | DUF6096 family protein | - |
| RF668_RS07630 (RF668_07630) | - | 1460719..1461090 (+) | 372 | WP_309558482.1 | hypothetical protein | - |
| RF668_RS07635 (RF668_07635) | - | 1461121..1465902 (+) | 4782 | WP_309558483.1 | phage tail protein | - |
| RF668_RS07640 (RF668_07640) | - | 1465914..1466279 (+) | 366 | WP_309558485.1 | DUF6711 family protein | - |
| RF668_RS07645 (RF668_07645) | - | 1466292..1468793 (+) | 2502 | WP_309558487.1 | gp58-like family protein | - |
| RF668_RS07650 (RF668_07650) | - | 1468790..1468927 (+) | 138 | WP_309558488.1 | hypothetical protein | - |
| RF668_RS07655 (RF668_07655) | - | 1468927..1470390 (+) | 1464 | WP_309558490.1 | hypothetical protein | - |
| RF668_RS07660 (RF668_07660) | - | 1470408..1470626 (+) | 219 | WP_309558491.1 | hemolysin XhlA family protein | - |
| RF668_RS07665 (RF668_07665) | - | 1470640..1470864 (+) | 225 | WP_043735322.1 | phage holin | - |
| RF668_RS07670 (RF668_07670) | - | 1470861..1472150 (+) | 1290 | WP_309558493.1 | LysM peptidoglycan-binding domain-containing protein | - |
| RF668_RS07675 (RF668_07675) | - | 1472255..1472614 (+) | 360 | WP_254255777.1 | YxeA family protein | - |
| RF668_RS07680 (RF668_07680) | - | 1472820..1473308 (+) | 489 | WP_309558496.1 | hypothetical protein | - |
| RF668_RS07685 (RF668_07685) | - | 1473292..1473756 (+) | 465 | WP_309558497.1 | hypothetical protein | - |
| RF668_RS07690 (RF668_07690) | - | 1473743..1474558 (+) | 816 | WP_309558498.1 | hypothetical protein | - |
| RF668_RS07700 (RF668_07700) | - | 1475364..1476089 (+) | 726 | WP_309558499.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| RF668_RS07710 (RF668_07710) | - | 1476608..1477378 (-) | 771 | WP_021211942.1 | hypothetical protein | - |
| RF668_RS07715 (RF668_07715) | - | 1477486..1478136 (-) | 651 | WP_052206569.1 | Ltp family lipoprotein | - |
| RF668_RS07720 (RF668_07720) | - | 1478521..1478682 (+) | 162 | WP_185752997.1 | hypothetical protein | - |
| RF668_RS07725 (RF668_07725) | - | 1478764..1479066 (+) | 303 | WP_043735258.1 | MazG-like protein | - |
| RF668_RS07735 (RF668_07735) | arsC | 1479810..1480214 (+) | 405 | WP_021165525.1 | arsenate reductase (thioredoxin) | - |
| RF668_RS07740 (RF668_07740) | - | 1480326..1481162 (+) | 837 | WP_043735256.1 | metallophosphoesterase | - |
| RF668_RS07745 (RF668_07745) | - | 1481255..1482166 (+) | 912 | WP_043735255.1 | CHAP domain-containing protein | - |
| RF668_RS07750 (RF668_07750) | - | 1482402..1482764 (+) | 363 | WP_043735253.1 | TIGR02328 family protein | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18354.18 Da Isoelectric Point: 5.2389
>NTDB_id=876888 RF668_RS07460 WP_309558437.1 1443411..1443911(+) (ssb) [Lactococcus cremoris strain KCKM 0438]
MINNVTLVGRITKEPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENFANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSVPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVTLVGRITKEPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENFANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSVPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=876888 RF668_RS07460 WP_309558437.1 1443411..1443911(+) (ssb) [Lactococcus cremoris strain KCKM 0438]
ATGATAAATAATGTCACTCTAGTAGGAAGAATCACTAAAGAACCTGAACTGAGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTTGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGGGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGTACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCATTTGGTAGCTCACCGATGGAAATTTCA
GATGATGACCTACCATTTTAA
ATGATAAATAATGTCACTCTAGTAGGAAGAATCACTAAAGAACCTGAACTGAGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTTGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGGGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGTACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCATTTGGTAGCTCACCGATGGAAATTTCA
GATGATGACCTACCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.302 |
100 |
0.614 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.225 |
100 |
0.596 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
33.898 |
100 |
0.361 |