Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RF668_RS03785 Genome accession   NZ_CP133787
Coordinates   739355..739855 (+) Length   166 a.a.
NCBI ID   WP_043737574.1    Uniprot ID   A0AAX4A826
Organism   Lactococcus cremoris strain KCKM 0438     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 734355..744855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RF668_RS03770 (RF668_03770) - 735995..737461 (-) 1467 WP_011677244.1 amino acid permease -
  RF668_RS03775 (RF668_03775) - 737983..738837 (+) 855 WP_042748545.1 undecaprenyl-diphosphate phosphatase -
  RF668_RS03780 (RF668_03780) rpsF 739031..739324 (+) 294 WP_011677242.1 30S ribosomal protein S6 -
  RF668_RS03785 (RF668_03785) ssb 739355..739855 (+) 501 WP_043737574.1 single-stranded DNA-binding protein Machinery gene
  RF668_RS03790 (RF668_03790) rpsR 740027..740272 (+) 246 WP_003131952.1 30S ribosomal protein S18 -
  RF668_RS03795 (RF668_03795) - 740403..741188 (+) 786 WP_011836104.1 metallophosphoesterase -
  RF668_RS03800 (RF668_03800) - 741260..741568 (-) 309 WP_043737571.1 DUF960 domain-containing protein -
  RF668_RS03805 (RF668_03805) - 741607..742455 (-) 849 WP_043737569.1 MurR/RpiR family transcriptional regulator -
  RF668_RS03810 (RF668_03810) gnd 742879..743784 (+) 906 WP_043737566.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18233.05 Da        Isoelectric Point: 5.2279

>NTDB_id=876861 RF668_RS03785 WP_043737574.1 739355..739855(+) (ssb) [Lactococcus cremoris strain KCKM 0438]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGASAGSYSAPSQSTNNSPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=876861 RF668_RS03785 WP_043737574.1 739355..739855(+) (ssb) [Lactococcus cremoris strain KCKM 0438]
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTGGC
AACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGTCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGAGGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCTAGCCAATCTACAAATAATAGTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCGATGGAAATCTCG
GATGATGACCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.404

100

0.633
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.225

100

0.596
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.855

0.373
  ssb Glaesserella parasuis strain SC1401

33.898

100

0.361