Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RHM55_RS12125 Genome accession   NZ_CP133784
Coordinates   2585048..2585593 (-) Length   181 a.a.
NCBI ID   WP_322182343.1    Uniprot ID   -
Organism   Pseudomonas sp. MH9.2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2580048..2590593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM55_RS12100 (RHM55_12100) - 2580099..2580389 (+) 291 WP_322182331.1 (2Fe-2S)-binding protein -
  RHM55_RS12105 (RHM55_12105) - 2580386..2581747 (+) 1362 WP_322182335.1 FAD/NAD(P)-binding oxidoreductase -
  RHM55_RS12110 (RHM55_12110) - 2581744..2582928 (+) 1185 WP_322182337.1 FAD-dependent oxidoreductase -
  RHM55_RS12115 (RHM55_12115) - 2582925..2583968 (+) 1044 WP_322182339.1 ABC transporter substrate-binding protein -
  RHM55_RS12120 (RHM55_12120) - 2584222..2584710 (-) 489 WP_322182341.1 hypothetical protein -
  RHM55_RS12125 (RHM55_12125) ssb 2585048..2585593 (-) 546 WP_322182343.1 single-stranded DNA-binding protein Machinery gene
  RHM55_RS12130 (RHM55_12130) - 2585603..2587000 (-) 1398 WP_322182345.1 MFS transporter -
  RHM55_RS12135 (RHM55_12135) uvrA 2587130..2589973 (+) 2844 WP_322182348.1 excinuclease ABC subunit UvrA -
  RHM55_RS12140 (RHM55_12140) bfr 2590046..2590510 (-) 465 WP_322182350.1 bacterioferritin -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20038.26 Da        Isoelectric Point: 5.9505

>NTDB_id=876779 RHM55_RS12125 WP_322182343.1 2585048..2585593(-) (ssb) [Pseudomonas sp. MH9.2]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGEGAPQGQGGMSNSAPRPQQSRPQQSQPQSQPQSQPQRESRPAP
QQQAAPQPAPDFDSFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=876779 RHM55_RS12125 WP_322182343.1 2585048..2585593(-) (ssb) [Pseudomonas sp. MH9.2]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGATAAACAAACCGGTCAGAAGGTCGAAAAGACTGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCTGAAATCGCCGGCGAATACCTGCGCAAAGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAAACCCGCGAGTGGGAAAAAGACGGTATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAAGGCGAAGGCGCTCCACAGGGTCAAGGCGGCATGTCCAACTCCGCGCCGCGCC
CTCAACAGTCGCGTCCGCAGCAGTCCCAACCGCAATCCCAACCGCAATCCCAGCCACAACGCGAATCGCGTCCTGCGCCA
CAGCAGCAGGCCGCACCGCAACCGGCTCCGGATTTCGACAGCTTTGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.692

100

0.58
  ssb Neisseria gonorrhoeae MS11

49.724

100

0.497
  ssb Glaesserella parasuis strain SC1401

48.901

100

0.492
  ssb Neisseria meningitidis MC58

48.876

98.343

0.481