Detailed information NTG0876759

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RHM59_RS20905
• Genome accession: NZ_CP133783
• Coordinates: 4650524..4651396 (-)
• Length: 290 a.a.
• NCBI ID: WP_322285314.1
• Uniprot ID: A0AAU0TUN3
• Organism: Pseudomonas sp. MH10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4645524..4656396

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHM59_RS20875 (RHM59_20875)	-	4647433..4647606 (-)	174	WP_322285310.1	DUF3094 family protein	-
RHM59_RS20880 (RHM59_20880)	-	4647643..4648152 (-)	510	WP_322166100.1	MOSC domain-containing protein	-
RHM59_RS20885 (RHM59_20885)	-	4648149..4648778 (-)	630	WP_322166099.1	DUF1780 domain-containing protein	-
RHM59_RS20890 (RHM59_20890)	-	4648978..4649676 (+)	699	WP_322285311.1	energy-coupling factor ABC transporter permease	-
RHM59_RS20895 (RHM59_20895)	yacG	4649704..4649907 (-)	204	WP_322285312.1	DNA gyrase inhibitor YacG	-
RHM59_RS20900 (RHM59_20900)	coaE	4649904..4650527 (-)	624	WP_322285313.1	dephospho-CoA kinase	-
RHM59_RS20905 (RHM59_20905)	pilD	4650524..4651396 (-)	873	WP_322285314.1	A24 family peptidase	Machinery gene
RHM59_RS20910 (RHM59_20910)	pilC	4651398..4652615 (-)	1218	WP_322285315.1	type II secretion system F family protein	Machinery gene
RHM59_RS20915 (RHM59_20915)	pilB	4652618..4654318 (-)	1701	WP_322285316.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RHM59_RS20920 (RHM59_20920)	-	4654537..4654974 (+)	438	WP_416195104.1	pilin	-
RHM59_RS20930 (RHM59_20930)	nadC	4655240..4656088 (-)	849	WP_322166091.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31848.17 Da
• Isoelectric Point: 8.3800

>NTDB_id=876759 RHM59_RS20905 WP_322285314.1 4650524..4651396(-) (pilD) [Pseudomonas sp. MH10]
MPLINLLASSPLACVICTLVLGLLVGSFLNVVIYRLPIMLDRDWKSQSREMLSLPAEPEPDTFNLMLPHSRCPRCAHKIR
AWENLPVISYLFLGGKCSGCKAPISKRYPIIELACGLLSAFIAWHFGFGWQAAAMLVLAWGLLAMSLIDADHQLLPDALV
LPLLWLGLIVNTFGLFTNLHDALWGAVAGYMSLWLVFWTFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLASLVG
AVLGLIMLRLRNASTSTPIPFGPYLAIAGWIALLWGGQITASYMQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=876759 RHM59_RS20905 WP_322285314.1 4650524..4651396(-) (pilD) [Pseudomonas sp. MH10]
ATGCCGCTCATTAATTTGCTGGCCAGCTCTCCCCTGGCCTGTGTCATCTGCACTCTGGTATTGGGCCTGCTGGTCGGCAG
CTTTCTAAACGTCGTCATCTACCGCCTGCCCATCATGCTCGACCGCGATTGGAAGTCTCAATCCCGCGAAATGCTTTCGC
TCCCGGCTGAGCCGGAACCTGACACCTTTAACCTGATGCTCCCCCACTCCCGCTGCCCGCGCTGTGCGCACAAGATCCGA
GCATGGGAGAACTTGCCGGTGATCAGTTATCTGTTCCTCGGCGGCAAGTGCTCCGGCTGTAAAGCGCCTATCAGTAAGCG
TTACCCTATCATCGAACTCGCCTGCGGGCTGCTCTCGGCGTTTATTGCCTGGCATTTCGGGTTCGGCTGGCAGGCGGCGG
CGATGTTAGTGCTGGCGTGGGGCCTGCTGGCGATGAGTTTGATTGATGCGGACCATCAACTGTTGCCCGACGCGTTGGTG
CTGCCACTGTTATGGCTGGGTTTGATCGTTAACACCTTTGGGCTGTTCACTAACTTGCACGATGCCTTGTGGGGCGCGGT
GGCCGGTTACATGAGCCTGTGGTTGGTGTTTTGGACGTTTAAGTTGGTGACCGGCAAGGAAGGCATGGGCTATGGCGACT
TTAAGTTGCTGGCGATGCTCGGTGCGTGGGGTGGCTGGCAGATACTTCCGCTGACGATTTTGCTGGCGTCACTGGTGGGT
GCGGTGTTGGGCCTGATTATGTTGCGGTTGCGCAACGCGAGCACCAGCACGCCGATCCCCTTCGGTCCTTATTTGGCAAT
TGCAGGCTGGATCGCGCTGCTCTGGGGTGGTCAAATAACCGCCTCTTACATGCAGTTTGCCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.285	94.483	0.503
pilD	Vibrio campbellii strain DS40M4	49.823	97.586	0.486
pilD	Acinetobacter baumannii D1279779	51.095	94.483	0.483
pilD	Acinetobacter nosocomialis M2	50.73	94.483	0.479
pilD	Neisseria gonorrhoeae MS11	50.951	90.69	0.462