Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   RHM59_RS20820 Genome accession   NZ_CP133783
Coordinates   4637432..4638775 (-) Length   447 a.a.
NCBI ID   WP_322285306.1    Uniprot ID   -
Organism   Pseudomonas sp. MH10     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4632432..4643775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM59_RS20790 (RHM59_20790) - 4632974..4633774 (-) 801 WP_322166114.1 PilW family protein -
  RHM59_RS20795 (RHM59_20795) pilV 4633774..4634265 (-) 492 WP_322285305.1 type IV pilus modification protein PilV -
  RHM59_RS20800 (RHM59_20800) - 4634301..4634768 (-) 468 WP_322184865.1 GspH/FimT family pseudopilin -
  RHM59_RS20805 (RHM59_20805) thiO 4635114..4636220 (+) 1107 WP_322166111.1 glycine oxidase ThiO -
  RHM59_RS20810 (RHM59_20810) - 4636283..4636712 (-) 430 Protein_4120 hypothetical protein -
  RHM59_RS20815 (RHM59_20815) - 4636705..4637289 (-) 585 WP_416194726.1 transcriptional regulator -
  RHM59_RS20820 (RHM59_20820) pilR 4637432..4638775 (-) 1344 WP_322285306.1 sigma-54 dependent transcriptional regulator Regulator
  RHM59_RS20825 (RHM59_20825) pilS 4638778..4640370 (-) 1593 WP_322285307.1 sensor histidine kinase Regulator
  RHM59_RS20830 (RHM59_20830) - 4640360..4640599 (-) 240 WP_322166108.1 PP0621 family protein -
  RHM59_RS20835 (RHM59_20835) - 4640716..4641732 (-) 1017 WP_322166105.1 outer membrane protein assembly factor BamD -
  RHM59_RS20840 (RHM59_20840) rluD 4641884..4642846 (+) 963 WP_322285308.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RHM59_RS20845 (RHM59_20845) pgeF 4642855..4643580 (+) 726 WP_322285309.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 50284.42 Da        Isoelectric Point: 5.9406

>NTDB_id=876757 RHM59_RS20820 WP_322285306.1 4637432..4638775(-) (pilR) [Pseudomonas sp. MH10]
MSPQQKILIVDDEPDIRELLEITLGRMKLDTRSARNVREARDWLQREPFDLCLTDMRLLDGNGLELVQHIQQRYPQVPVA
MITAYGSLDTAINALKAGAFDFLTKPVDLTRLRELVASALRMHTPSGTENTFDSRLLGDSPPMRALRKQVSKLARSQAPI
YISGESGSGKELVARLIHEQGPRIDHPFVPVNCGAIPSELMESEFFGHRKGSFTGATEDKPGLFQAANGGTLFLDEVADL
PLAMQVKLLRVIQEKAVRSVGGQQELVVDVRILCATHKDLNAEVAAGRFRQDLYYRLNVIELRVPSLRERREDIVQLTDS
ILRRLAEGSGQPAATLNAQALETLKSYRFPGNVRELENMLERAYTLCDNDRIEASDLRLIDTPSISGPGEHHLADINDLE
DYLESIERTLILQALEETRWNRTAAAQRLNLTFRSLRYRLKKLGLDD

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=876757 RHM59_RS20820 WP_322285306.1 4637432..4638775(-) (pilR) [Pseudomonas sp. MH10]
ATGAGCCCACAGCAAAAAATCCTGATCGTCGACGATGAACCGGACATCCGTGAACTGTTGGAAATCACCCTCGGACGGAT
GAAGCTCGACACCCGCAGCGCGCGCAACGTTAGAGAAGCCCGGGACTGGTTGCAGCGCGAACCTTTTGATTTATGCCTGA
CCGATATGCGACTGCTCGATGGCAATGGCCTGGAACTGGTGCAGCACATCCAGCAGCGTTATCCGCAAGTGCCAGTGGCC
ATGATCACCGCCTACGGCAGCCTTGATACAGCGATCAATGCGCTGAAAGCCGGGGCCTTCGACTTCCTGACCAAACCGGT
GGACCTCACTCGCCTTCGCGAGTTAGTGGCTAGCGCGTTGCGCATGCACACCCCCAGCGGGACCGAGAACACGTTCGACA
GCCGCCTGCTGGGCGATTCGCCGCCGATGCGGGCGCTACGCAAACAGGTCAGTAAATTGGCCCGCAGTCAGGCGCCCATT
TATATCAGTGGCGAATCGGGCAGCGGCAAAGAACTGGTGGCGCGCCTGATTCACGAACAAGGCCCGAGGATCGACCATCC
ATTTGTGCCGGTCAACTGCGGGGCAATTCCATCTGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGTAAAGGCAGCTTTA
CCGGCGCGACTGAAGACAAACCAGGGCTCTTCCAAGCGGCCAACGGCGGGACGCTGTTCCTTGATGAAGTGGCGGATTTA
CCTTTGGCAATGCAAGTCAAACTGCTGCGGGTGATCCAGGAAAAAGCCGTGCGCAGCGTGGGCGGCCAGCAAGAACTGGT
CGTCGATGTGCGCATCCTATGCGCTACCCATAAAGACCTGAATGCCGAAGTTGCAGCCGGCCGTTTCCGTCAGGATTTGT
ACTACCGGCTGAACGTCATAGAATTGCGCGTGCCTTCGTTACGCGAACGCCGGGAAGACATCGTGCAACTGACTGACAGC
ATTCTCCGGCGATTGGCTGAAGGGTCGGGCCAGCCTGCTGCCACGCTCAACGCCCAAGCGCTGGAAACCCTGAAAAGCTA
TCGCTTTCCGGGCAACGTGCGCGAACTTGAGAACATGCTAGAGCGTGCCTACACCCTGTGCGATAACGACCGGATCGAAG
CCAGCGACTTGCGCCTCATAGACACCCCCAGCATCAGCGGTCCCGGCGAACACCACTTGGCCGACATCAACGACCTGGAA
GACTATCTGGAAAGCATCGAACGCACGCTGATCCTGCAAGCCTTGGAAGAAACCCGCTGGAACCGCACTGCCGCCGCGCA
ACGCCTGAACCTTACGTTTCGCTCGTTAAGGTATCGGTTGAAGAAGTTGGGGTTGGATGATTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

80.587

99.105

0.799
  pilR Acinetobacter baumannii strain A118

48.498

100

0.506
  luxO Vibrio cholerae strain A1552

37.584

100

0.376