Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   RHM59_RS20825 Genome accession   NZ_CP133783
Coordinates   4638778..4640370 (-) Length   530 a.a.
NCBI ID   WP_322285307.1    Uniprot ID   A0AAU0TSI6
Organism   Pseudomonas sp. MH10     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4633778..4645370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM59_RS20800 (RHM59_20800) - 4634301..4634768 (-) 468 WP_322184865.1 GspH/FimT family pseudopilin -
  RHM59_RS20805 (RHM59_20805) thiO 4635114..4636220 (+) 1107 WP_322166111.1 glycine oxidase ThiO -
  RHM59_RS20810 (RHM59_20810) - 4636283..4636712 (-) 430 Protein_4120 hypothetical protein -
  RHM59_RS20815 (RHM59_20815) - 4636705..4637289 (-) 585 WP_416194726.1 transcriptional regulator -
  RHM59_RS20820 (RHM59_20820) pilR 4637432..4638775 (-) 1344 WP_322285306.1 sigma-54 dependent transcriptional regulator Regulator
  RHM59_RS20825 (RHM59_20825) pilS 4638778..4640370 (-) 1593 WP_322285307.1 sensor histidine kinase Regulator
  RHM59_RS20830 (RHM59_20830) - 4640360..4640599 (-) 240 WP_322166108.1 PP0621 family protein -
  RHM59_RS20835 (RHM59_20835) - 4640716..4641732 (-) 1017 WP_322166105.1 outer membrane protein assembly factor BamD -
  RHM59_RS20840 (RHM59_20840) rluD 4641884..4642846 (+) 963 WP_322285308.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RHM59_RS20845 (RHM59_20845) pgeF 4642855..4643580 (+) 726 WP_322285309.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58625.87 Da        Isoelectric Point: 6.3419

>NTDB_id=876758 RHM59_RS20825 WP_322285307.1 4638778..4640370(-) (pilS) [Pseudomonas sp. MH10]
MPAEVLPLNGTQGQRILRLYHLYRLAIGITLILLISSNLDNDLLELVNVDLFRSGCWVYLIVNILAGVFLNRPEHAAQIF
ALAMADIVMLSALFYAGGGAPSGMGNLLIASVAISNVLLRGRIGLLIAAAAAIGIIYLTFYLSFNRPSAFNHYFQASMLG
ALSFAAALLVQMLTRRLDLSETLANARAADVDNLEELNALILQRMRTGILVLDARRLVLLANQGALTLMGNEQLIGKTID
AYSPQLVDRLRQWLINPMLRPHSVETSVAGPLLQPSFIALNHGEHRQTLVFLEDLSLISQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLKESEELTTPDRRLSQIIHDQTRRMDQVIENVLQLSRRRQADPQLLDLKSWLEDFVDEVRASALAN
QLLHVDIGTGTLSTRMDPEQLTQVLVNLLQNGLRYSAQNHDLAQVWLHLFHDPLSDLPVLEILDNGPGVADEQLPKIFEP
FFTTETKGTGLGLYISRELCESNQAHLDYRPREGGGSCFRITFAHPLKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=876758 RHM59_RS20825 WP_322285307.1 4638778..4640370(-) (pilS) [Pseudomonas sp. MH10]
GTGCCCGCTGAAGTACTTCCACTAAACGGCACCCAAGGCCAGCGCATCCTAAGGCTTTATCATCTTTATCGCCTGGCCAT
CGGCATCACGTTAATCCTGTTGATCTCCAGCAACCTCGACAACGACCTGCTGGAGTTGGTCAACGTAGACCTCTTCAGAT
CGGGTTGCTGGGTTTACCTGATCGTCAACATTTTGGCCGGCGTCTTCCTGAACAGGCCGGAACACGCAGCACAGATTTTT
GCCCTGGCGATGGCCGATATCGTGATGCTGTCCGCGCTGTTCTATGCCGGCGGCGGTGCTCCCAGCGGGATGGGCAACTT
GCTGATCGCCTCGGTGGCCATCAGCAACGTGCTGTTGCGCGGGCGCATAGGCTTGCTGATTGCCGCCGCTGCCGCCATCG
GCATTATCTACCTGACCTTCTACCTCAGCTTCAACCGACCTTCAGCCTTCAATCACTACTTTCAGGCAAGCATGCTCGGT
GCGTTGAGTTTTGCGGCAGCGTTATTGGTGCAAATGCTTACTCGACGTCTGGACCTAAGCGAAACCTTGGCCAACGCGCG
TGCAGCGGATGTCGACAACCTGGAAGAGCTCAATGCGCTGATCTTGCAACGTATGCGTACCGGCATTCTGGTGCTCGACG
CCCGGCGCCTAGTGCTCCTGGCCAACCAAGGGGCATTGACGCTGATGGGTAATGAGCAGTTGATCGGCAAAACCATTGAC
GCTTACTCGCCCCAATTGGTGGATCGTTTACGGCAATGGTTGATCAACCCCATGTTACGTCCGCACAGCGTCGAGACGTC
CGTTGCGGGCCCGCTGCTGCAACCGAGTTTTATCGCCTTAAACCATGGCGAGCACCGGCAAACATTGGTGTTCCTAGAAG
ACTTATCGTTGATCTCCCAACAGGCCCAACAACTTAAACTGGCCGCACTGGGGCGCCTGACGGCCGGTATTGCCCACGAA
ATTCGTAACCCGCTGGGCGCAATTAGTCACGCGGCCCAGTTGCTAAAAGAATCAGAGGAATTGACTACGCCAGACCGTCG
ACTGAGCCAGATCATCCATGACCAAACGCGGCGCATGGATCAAGTCATCGAAAACGTCCTGCAGCTGTCTCGTCGACGTC
AAGCCGACCCTCAGCTGCTTGATCTCAAGAGCTGGCTGGAAGACTTTGTCGACGAGGTCCGCGCCTCAGCGCTTGCCAAT
CAACTGCTGCACGTCGACATCGGAACCGGCACGCTGAGCACACGGATGGACCCCGAACAATTGACCCAAGTGTTGGTCAA
TCTGCTGCAGAACGGCTTGCGCTACAGTGCTCAGAACCACGATCTGGCGCAGGTCTGGCTTCATTTGTTTCACGATCCGC
TCAGCGACTTACCGGTGCTTGAAATACTCGATAACGGCCCTGGCGTGGCCGACGAGCAATTACCGAAGATTTTCGAACCG
TTCTTCACCACGGAAACCAAAGGCACCGGCCTGGGCCTTTATATTTCCCGTGAGTTGTGCGAAAGCAATCAGGCGCATCT
GGATTACAGACCTCGGGAAGGCGGCGGCAGCTGTTTTCGCATAACCTTTGCCCATCCGCTGAAGTTGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

63.585

100

0.636