Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RHM59_RS19525 Genome accession   NZ_CP133783
Coordinates   4357365..4357901 (+) Length   178 a.a.
NCBI ID   WP_322166316.1    Uniprot ID   -
Organism   Pseudomonas sp. MH10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4352365..4362901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM59_RS19510 (RHM59_19510) bfr 4352453..4352917 (+) 465 WP_322166319.1 bacterioferritin -
  RHM59_RS19515 (RHM59_19515) uvrA 4352985..4355828 (-) 2844 WP_322166318.1 excinuclease ABC subunit UvrA -
  RHM59_RS19520 (RHM59_19520) - 4355958..4357355 (+) 1398 WP_322166317.1 MFS transporter -
  RHM59_RS19525 (RHM59_19525) ssb 4357365..4357901 (+) 537 WP_322166316.1 single-stranded DNA-binding protein Machinery gene
  RHM59_RS19530 (RHM59_19530) - 4358248..4362288 (+) 4041 WP_322285227.1 Pls/PosA family non-ribosomal peptide synthetase -
  RHM59_RS19535 (RHM59_19535) - 4362285..4362617 (+) 333 WP_322285228.1 hypothetical protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19751.87 Da        Isoelectric Point: 5.9455

>NTDB_id=876755 RHM59_RS19525 WP_322166316.1 4357365..4357901(+) (ssb) [Pseudomonas sp. MH10]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDGAPQGQGGNSNSAPRPQQQRPQQSSQPQQSQPQRESRPAPQQ
QAPQPAPDFDSFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=876755 RHM59_RS19525 WP_322166316.1 4357365..4357901(+) (ssb) [Pseudomonas sp. MH10]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAATGGACCGACAAACAAACCGGTCAGAAAGTCGAAAAGACTGAAT
GGCACCGTGTTTCGATGTTCGGCAAAGTCGCTGAAATCGCTGGCGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAG
GGCAAGCTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAAGGCAC
TATGCAACTGCTGGGCGGTCGCCCACAAGGCGACGGTGCTCCACAGGGTCAAGGCGGCAACAGCAACTCTGCGCCACGCC
CTCAACAGCAGCGTCCGCAGCAGTCATCGCAGCCGCAGCAATCCCAGCCACAACGCGAATCGCGTCCTGCTCCCCAGCAG
CAAGCGCCGCAACCGGCTCCGGATTTTGATAGTTTTGATGACGATATTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.983

100

0.573
  ssb Neisseria meningitidis MC58

50

100

0.506
  ssb Neisseria gonorrhoeae MS11

50

100

0.506
  ssb Glaesserella parasuis strain SC1401

48.619

100

0.494