Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | AABJ71_RS09730 | Genome accession | NZ_AP027588 |
| Coordinates | 1970816..1971826 (+) | Length | 336 a.a. |
| NCBI ID | WP_042111557.1 | Uniprot ID | - |
| Organism | Escherichia coli strain LR-64-1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1965816..1976826
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AABJ71_RS09690 (VEE11_18520) | nudB | 1966763..1967215 (+) | 453 | WP_001300367.1 | dihydroneopterin triphosphate diphosphatase | - |
| AABJ71_RS09695 (VEE11_18530) | yebC | 1967244..1967984 (+) | 741 | WP_000907234.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| AABJ71_RS09700 (VEE11_18540) | ruvC | 1968019..1968540 (+) | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| AABJ71_RS09705 (VEE11_18550) | - | 1968542..1968805 (-) | 264 | Protein_1895 | YiiX/YebB-like N1pC/P60 family cysteine hydrolase | - |
| AABJ71_RS09710 (VEE11_18570) | - | 1968863..1969560 (+) | 698 | WP_103215986.1 | IS1-like element IS1A family transposase | - |
| AABJ71_RS09715 (VEE11_18580) | - | 1969577..1969921 (-) | 345 | Protein_1897 | YiiX/YebB-like N1pC/P60 family cysteine hydrolase | - |
| AABJ71_RS09720 | yobI | 1969992..1970057 (+) | 66 | WP_072094247.1 | stress response small protein YobI | - |
| AABJ71_RS09725 (VEE11_18590) | ruvA | 1970196..1970807 (+) | 612 | WP_000580327.1 | Holliday junction branch migration protein RuvA | - |
| AABJ71_RS09730 (VEE11_18600) | ruvB | 1970816..1971826 (+) | 1011 | WP_042111557.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| AABJ71_RS09735 (VEE11_18610) | znuB | 1972167..1972952 (-) | 786 | WP_000571479.1 | zinc ABC transporter permease subunit ZnuB | - |
| AABJ71_RS09740 (VEE11_18620) | znuC | 1972949..1973704 (-) | 756 | WP_000202990.1 | zinc ABC transporter ATP-binding protein ZnuC | - |
| AABJ71_RS09745 (VEE11_18630) | znuA | 1973783..1974715 (+) | 933 | WP_001300644.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| AABJ71_RS09750 (VEE11_18640) | mepM | 1974731..1976053 (+) | 1323 | WP_338384506.1 | murein DD-endopeptidase MepM | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37187.84 Da Isoelectric Point: 4.8569
>NTDB_id=87674 AABJ71_RS09730 WP_042111557.1 1970816..1971826(+) (ruvB) [Escherichia coli strain LR-64-1]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VKLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VKLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP
Nucleotide
Download Length: 1011 bp
>NTDB_id=87674 AABJ71_RS09730 WP_042111557.1 1970816..1971826(+) (ruvB) [Escherichia coli strain LR-64-1]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTAGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATTTGTTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAACATTGTCGCCAATGAAATGGGC
GTTAAATTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCGATGCTCACTAACCTTGAACCGCA
TGACGTGCTGTTTATTGATGAGATCCACCGTCTATCGCCAGTTGTTGAAGAAGTGCTGTACCCGGCAATGGAAGACTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGACCGTTTTGGGATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGGGCGCTGGAAGTTGCTC
GTCGCGCTCGCGGTACGCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGTTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
GTTATTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTTGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTGCTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTAGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATTTGTTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAACATTGTCGCCAATGAAATGGGC
GTTAAATTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCGATGCTCACTAACCTTGAACCGCA
TGACGTGCTGTTTATTGATGAGATCCACCGTCTATCGCCAGTTGTTGAAGAAGTGCTGTACCCGGCAATGGAAGACTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGACCGTTTTGGGATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGGGCGCTGGAAGTTGCTC
GTCGCGCTCGCGGTACGCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGTTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
GTTATTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTTGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTGCTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
60.486 |
97.917 |
0.592 |
| ruvB | Streptococcus pneumoniae TIGR4 |
58.621 |
94.94 |
0.557 |
| ruvB | Streptococcus pneumoniae R6 |
58.621 |
94.94 |
0.557 |
| ruvB | Streptococcus pneumoniae D39 |
58.621 |
94.94 |
0.557 |
| ruvB | Synechocystis sp. PCC 6803 |
53.251 |
96.131 |
0.512 |
| ruvB | Helicobacter pylori 26695 |
51.724 |
94.94 |
0.491 |