Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RHM68_RS22430 Genome accession   NZ_CP133782
Coordinates   4942112..4942648 (-) Length   178 a.a.
NCBI ID   WP_322219190.1    Uniprot ID   -
Organism   Pseudomonas sp. DC1.2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4937112..4947648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM68_RS22395 (RHM68_22395) - 4937485..4938183 (+) 699 WP_322219183.1 PspA/IM30 family protein -
  RHM68_RS22400 (RHM68_22400) - 4938253..4938816 (+) 564 WP_322219184.1 rhomboid family intramembrane serine protease -
  RHM68_RS22405 (RHM68_22405) - 4938889..4939041 (+) 153 WP_322219185.1 hypothetical protein -
  RHM68_RS22410 (RHM68_22410) - 4939028..4939684 (+) 657 WP_322219186.1 DUF2491 family protein -
  RHM68_RS22415 (RHM68_22415) - 4939698..4940126 (+) 429 WP_322219187.1 DUF350 domain-containing protein -
  RHM68_RS22420 (RHM68_22420) - 4940146..4940874 (+) 729 WP_322219188.1 DUF1190 domain-containing protein -
  RHM68_RS22425 (RHM68_22425) - 4940887..4942044 (+) 1158 WP_322219189.1 glutathionylspermidine synthase family protein -
  RHM68_RS22430 (RHM68_22430) ssb 4942112..4942648 (-) 537 WP_322219190.1 single-stranded DNA-binding protein Machinery gene
  RHM68_RS22435 (RHM68_22435) - 4942658..4944055 (-) 1398 WP_322219191.1 MFS transporter -
  RHM68_RS22440 (RHM68_22440) uvrA 4944247..4947081 (+) 2835 WP_322219192.1 excinuclease ABC subunit UvrA -
  RHM68_RS22445 (RHM68_22445) bfr 4947149..4947613 (-) 465 WP_322219193.1 bacterioferritin -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19712.87 Da        Isoelectric Point: 5.9366

>NTDB_id=876727 RHM68_RS22430 WP_322219190.1 4942112..4942648(-) (ssb) [Pseudomonas sp. DC1.2]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGEQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSSPQQSRPAPQQ
AAPQPAPDFDSFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=876727 RHM68_RS22430 WP_322219190.1 4942112..4942648(-) (ssb) [Pseudomonas sp. DC1.2]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACTAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGATAAGCAAACCGGTCAGAAGGTCGAGAAGACTGAAT
GGCACCGTGTATCGATGTTTGGCAAGGTTGCCGAAATCGCCGGCGAGTATCTGCGTAAAGGTTCGCAGGTTTATATCGAA
GGCAAGTTGCAAACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACGGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGTTGGGCGGCCGTCCACAGCAGGGCGAGCAACAAGGCGGGGGCAATAACTACCAGCAATCCGCCCCGGCCC
CGCGCCAACAGGCTCCGCGTCCTCAGCAGTCGGCACCGCAACAGTCTTCACCGCAACAATCGCGCCCGGCACCACAGCAG
GCTGCCCCGCAGCCGGCTCCGGATTTCGACAGCTTTGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.791

100

0.601
  ssb Neisseria meningitidis MC58

50

100

0.511
  ssb Neisseria gonorrhoeae MS11

50

100

0.511
  ssb Glaesserella parasuis strain SC1401

48.901

100

0.5