Detailed information NTG0876725

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: RHM68_RS21470
• Genome accession: NZ_CP133782
• Coordinates: 4744006..4745346 (+)
• Length: 446 a.a.
• NCBI ID: WP_322218949.1
• Uniprot ID: -
• Organism: Pseudomonas sp. DC1.2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4739006..4750346

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHM68_RS21445 (RHM68_21445)	pgeF	4739194..4739919 (-)	726	WP_322218940.1	peptidoglycan editing factor PgeF	-
RHM68_RS21450 (RHM68_21450)	rluD	4739916..4740878 (-)	963	WP_322218942.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
RHM68_RS21455 (RHM68_21455)	-	4741030..4742052 (+)	1023	WP_322218944.1	outer membrane protein assembly factor BamD	-
RHM68_RS21460 (RHM68_21460)	-	4742191..4742424 (+)	234	WP_322218946.1	PP0621 family protein	-
RHM68_RS21465 (RHM68_21465)	pilS	4742393..4744003 (+)	1611	WP_416195210.1	sensor histidine kinase	Regulator
RHM68_RS21470 (RHM68_21470)	pilR	4744006..4745346 (+)	1341	WP_322218949.1	sigma-54 dependent transcriptional regulator	Regulator
RHM68_RS21475 (RHM68_21475)	thiO	4745404..4746504 (-)	1101	WP_322218950.1	glycine oxidase ThiO	-
RHM68_RS21480 (RHM68_21480)	-	4746561..4746962 (-)	402	WP_322218952.1	type IV pilin protein	-
RHM68_RS21485 (RHM68_21485)	-	4746977..4750084 (-)	3108	WP_322218954.1	pilus assembly protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49619.05 Da
• Isoelectric Point: 6.9011

>NTDB_id=876725 RHM68_RS21470 WP_322218949.1 4744006..4745346(+) (pilR) [Pseudomonas sp. DC1.2]
MSPRQKILIVDDEPDIRELLEITLGRMKLDTLSARNLGEAQALLAREAFDLCLTDMRLPDGTGLELVQHIQQRYPHVPVA
MITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVTSALRLSAPGGASSAIDRRLLGDSLPMRSLRKQIDKLSRSQAPV
YISGESGSGKELVARLIHEQGPRASRPFVPVNCGAIPSELMESEFFGHRKGSFSGAYEDKPGLFQAAQGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRCVGGQQEVVVDVRILCATHKDLEAEVAAERFRQDLYYRLNVIELRVAPLRERRDDIESLASN
VLKRLAVGTGHPPAKLHPLALEALKSYRFPGNVRELENMLERAHTLCENQQIEAGDLRLAEGNCAADVGATDLTRIDSLE
DYLENIERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=876725 RHM68_RS21470 WP_322218949.1 4744006..4745346(+) (pilR) [Pseudomonas sp. DC1.2]
ATGAGCCCTCGGCAAAAAATCCTGATCGTCGATGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGGACGGAT
GAAGCTTGACACCCTCAGTGCCCGAAACCTCGGCGAAGCCCAGGCGTTACTAGCCAGGGAGGCTTTCGACTTGTGCCTGA
CCGACATGCGCCTGCCCGATGGCACCGGCCTGGAGTTGGTGCAGCACATCCAGCAACGCTACCCCCACGTGCCCGTAGCA
ATGATCACCGCCTACGGCAGCCTGGAAACCGCCATCAATGCGCTAAAGGCCGGAGCCTTCGACTTTCTGACCAAACCGGT
GGACCTGACTCGCCTGCGAGAGCTGGTCACCAGCGCCCTGCGCCTGTCAGCTCCGGGTGGCGCCAGTAGCGCCATCGACC
GTCGATTACTCGGCGACTCGCTGCCCATGCGCAGTCTGCGTAAACAAATCGACAAACTGTCCCGTAGTCAGGCTCCGGTG
TACATCAGCGGCGAATCCGGCAGCGGTAAGGAGCTGGTGGCCCGACTGATTCACGAACAGGGCCCTCGCGCCAGCCGGCC
CTTCGTCCCGGTCAATTGCGGGGCGATACCGTCAGAGTTGATGGAAAGCGAGTTTTTTGGCCATCGCAAAGGCAGCTTCA
GCGGCGCCTACGAAGACAAACCCGGACTGTTCCAGGCCGCTCAGGGTGGCACGCTGTTCCTTGATGAAGTGGCTGATTTG
CCGCTGGCGATGCAGGTCAAACTGCTGCGAGCGATTCAGGAGAAAGCAGTTCGCTGCGTCGGCGGGCAACAGGAAGTCGT
GGTGGATGTGCGTATTCTCTGCGCGACCCATAAAGACCTTGAGGCCGAGGTTGCCGCCGAACGCTTTCGCCAGGATTTGT
ACTACCGCCTCAACGTCATTGAGCTGCGGGTTGCGCCGTTGCGCGAGCGCCGAGACGATATAGAGTCCCTGGCCAGTAAT
GTGCTCAAGCGCCTCGCCGTCGGCACGGGGCACCCTCCGGCAAAACTGCATCCGCTAGCCCTTGAAGCGCTCAAAAGCTA
CCGTTTCCCTGGCAATGTCAGGGAGTTGGAAAACATGCTCGAACGGGCTCATACCTTATGTGAGAACCAACAGATTGAGG
CGGGGGACTTGCGTCTGGCCGAAGGTAACTGCGCCGCCGATGTCGGTGCAACGGACCTGACACGGATCGACAGCCTTGAA
GACTATCTGGAAAACATTGAGCGCAAACTCATCCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCGCA
GCGGTTGAATTTATCGTTTCGGTCGATGCGCTACAGGCTCAAAAAACTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	80.135	99.327	0.796
pilR	Acinetobacter baumannii strain A118	47.93	100	0.493
luxO	Vibrio cholerae strain A1552	36.261	99.552	0.361