Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   RHM68_RS21465 Genome accession   NZ_CP133782
Coordinates   4742393..4744003 (+) Length   536 a.a.
NCBI ID   WP_416195210.1    Uniprot ID   -
Organism   Pseudomonas sp. DC1.2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4737393..4749003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM68_RS21445 (RHM68_21445) pgeF 4739194..4739919 (-) 726 WP_322218940.1 peptidoglycan editing factor PgeF -
  RHM68_RS21450 (RHM68_21450) rluD 4739916..4740878 (-) 963 WP_322218942.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RHM68_RS21455 (RHM68_21455) - 4741030..4742052 (+) 1023 WP_322218944.1 outer membrane protein assembly factor BamD -
  RHM68_RS21460 (RHM68_21460) - 4742191..4742424 (+) 234 WP_322218946.1 PP0621 family protein -
  RHM68_RS21465 (RHM68_21465) pilS 4742393..4744003 (+) 1611 WP_416195210.1 sensor histidine kinase Regulator
  RHM68_RS21470 (RHM68_21470) pilR 4744006..4745346 (+) 1341 WP_322218949.1 sigma-54 dependent transcriptional regulator Regulator
  RHM68_RS21475 (RHM68_21475) thiO 4745404..4746504 (-) 1101 WP_322218950.1 glycine oxidase ThiO -
  RHM68_RS21480 (RHM68_21480) - 4746561..4746962 (-) 402 WP_322218952.1 type IV pilin protein -

Sequence

Protein


Download         Length: 536 a.a.        Molecular weight: 59194.23 Da        Isoelectric Point: 7.5915

>NTDB_id=876724 RHM68_RS21465 WP_416195210.1 4742393..4744003(+) (pilS) [Pseudomonas sp. DC1.2]
MSKARAPVIADSNSVASKQAQRLLRLYHLYRLSIGITLVLLISSNMDNQLLTFSNGNLLRNGSWFYLVLNILLVVFMENI
RRPVQLFSLALTDVLLLSGLFYAAGGAASAVGNLLIVSVAIGNTLLRGRIGLLIAAVAALGIVGLSFLLSFSRPISPNDY
LQAGTLGALCFAAALLVQGLIRRLEVSEHLAEQRASEVLGLEVLNALILQRMRTGILVLDDQRRVRLANHSALTLLGQDR
LDGEIIDDYSPALVDRLQLWFSNPTLRPQTLKIAGSGLELQPSFISLDQGPRHQTLVFLEDLAQVTQQAQQLKLVALGRL
TASIAHEIRNPLGAISHAAQLLYESEELTSADRRLSQIVQDHSQRMNRVIENVLQLSRRQQTTPQRLDLPPWLEQFVTQA
REQAREGQHIHLNIGSGNITTLMDPNQLTQILDNLLRNAWRHGAMSAGPAEVWLELFIDPNSLLPVLEVLDNGPGVAPDQ
QVHLFEPFFTTSSQGTGLGLYLSRELCESNQARLDFKPRQDGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1611 bp        

>NTDB_id=876724 RHM68_RS21465 WP_416195210.1 4742393..4744003(+) (pilS) [Pseudomonas sp. DC1.2]
TTGAGCAAGGCCCGGGCACCCGTGATCGCTGATTCCAATAGCGTCGCCAGCAAACAGGCACAGCGACTGCTGCGCCTCTA
CCATCTTTACCGCTTAAGCATCGGCATCACGCTGGTGCTACTGATCTCCAGCAACATGGACAACCAGTTGCTGACGTTCT
CCAATGGCAATTTGCTGCGCAATGGCAGTTGGTTCTACCTGGTGTTGAATATCCTGCTGGTGGTGTTCATGGAGAACATC
CGGCGCCCAGTGCAACTGTTCAGCCTCGCCCTGACCGATGTGTTGCTGCTCAGTGGCTTGTTCTATGCGGCGGGCGGTGC
CGCCAGTGCCGTTGGCAATTTGCTGATCGTGTCGGTGGCCATCGGCAACACCCTGTTGCGCGGAAGGATCGGCCTGCTTA
TTGCCGCAGTCGCCGCACTGGGCATCGTCGGCTTGAGCTTCCTCCTGAGTTTCAGTCGCCCCATCAGCCCCAACGACTAC
CTGCAAGCCGGCACCCTAGGCGCGCTGTGCTTCGCCGCCGCGTTACTGGTGCAGGGGTTGATCCGGCGCCTGGAAGTCAG
CGAGCACCTTGCCGAGCAGCGAGCCAGCGAAGTGCTCGGGCTGGAAGTGCTCAATGCGCTGATCTTGCAACGCATGCGTA
CCGGCATCCTGGTGCTCGATGACCAGCGACGAGTACGACTGGCCAACCACAGCGCCCTGACCTTGCTTGGCCAGGACCGT
CTCGACGGCGAAATAATCGATGACTATTCGCCGGCCTTGGTTGATCGTCTGCAATTGTGGTTCAGCAATCCGACCTTGCG
CCCGCAAACCTTGAAAATCGCGGGCTCGGGACTGGAACTGCAACCGAGCTTCATTTCGCTCGACCAGGGCCCGCGCCACC
AAACGCTGGTCTTTCTCGAAGACTTGGCGCAGGTCACTCAACAAGCCCAACAACTGAAACTTGTTGCCCTCGGGCGTCTC
ACTGCCAGTATCGCCCATGAGATACGCAACCCACTGGGCGCCATCAGCCATGCCGCTCAGTTGCTGTATGAGTCCGAGGA
ACTGACCAGCGCCGATCGACGCTTAAGCCAAATTGTTCAAGACCACTCCCAGCGAATGAACCGTGTGATCGAAAACGTCC
TGCAACTGTCCCGCCGCCAGCAAACAACGCCGCAACGGCTGGATCTGCCACCGTGGCTGGAGCAGTTCGTCACCCAGGCC
CGTGAGCAAGCCCGAGAGGGTCAGCACATTCACCTGAACATCGGCTCGGGAAACATCACAACTTTGATGGACCCGAACCA
GTTGACGCAGATTCTCGATAATTTGTTGCGCAATGCCTGGCGTCATGGCGCGATGAGCGCGGGCCCCGCCGAGGTCTGGC
TTGAGTTATTTATCGACCCCAACAGCCTGCTGCCAGTCCTTGAAGTGCTAGACAACGGCCCCGGTGTGGCGCCGGACCAG
CAGGTTCATTTGTTTGAACCGTTCTTCACCACCAGCAGCCAAGGCACAGGCCTGGGACTTTATCTGTCCCGTGAGCTGTG
CGAAAGCAACCAGGCCCGCCTAGACTTCAAACCACGCCAAGATGGCGGCTGCTTCCGCATCACTTTTGCGCACGGACGGA
AACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(316-381)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(424-529)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.091

98.507

0.582