Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WLQ80_RS16240 Genome accession   NZ_CP150019
Coordinates   3008815..3009444 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 2024CK-00188     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3003815..3014444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WLQ80_RS16225 (WLQ80_16165) helD 3004057..3006111 (-) 2055 WP_000420536.1 DNA helicase IV -
  WLQ80_RS16230 (WLQ80_16170) yccF 3006234..3006680 (+) 447 WP_001261235.1 YccF domain-containing protein -
  WLQ80_RS16235 (WLQ80_16175) yccS 3006690..3008852 (+) 2163 WP_000875015.1 YccS family putative transporter -
  WLQ80_RS16240 (WLQ80_16180) sxy/tfoX 3008815..3009444 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WLQ80_RS16245 (WLQ80_16185) sulA 3009663..3010172 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  WLQ80_RS16250 (WLQ80_16190) ompA 3010529..3011581 (+) 1053 WP_000750419.1 porin OmpA -
  WLQ80_RS16255 (WLQ80_16195) matP 3011656..3012108 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  WLQ80_RS16260 (WLQ80_16200) ycbZ 3012294..3014054 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=876692 WLQ80_RS16240 WP_000839153.1 3008815..3009444(-) (sxy/tfoX) [Escherichia coli strain 2024CK-00188]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=876692 WLQ80_RS16240 WP_000839153.1 3008815..3009444(-) (sxy/tfoX) [Escherichia coli strain 2024CK-00188]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1