Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RHM61_RS07835 Genome accession   NZ_CP133779
Coordinates   1710746..1711243 (+) Length   165 a.a.
NCBI ID   WP_322250567.1    Uniprot ID   A0AAU0SB10
Organism   Undibacterium sp. CCC3.4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1705746..1716243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM61_RS07825 (RHM61_07825) uvrA 1706246..1709191 (-) 2946 WP_322250566.1 excinuclease ABC subunit UvrA -
  RHM61_RS07830 (RHM61_07830) - 1709342..1710520 (+) 1179 WP_322251063.1 MFS transporter -
  RHM61_RS07835 (RHM61_07835) ssb 1710746..1711243 (+) 498 WP_322250567.1 single-stranded DNA-binding protein Machinery gene
  RHM61_RS07840 (RHM61_07840) - 1711757..1711966 (+) 210 WP_322250568.1 DUF6434 domain-containing protein -
  RHM61_RS07845 (RHM61_07845) - 1712008..1712940 (-) 933 WP_322250569.1 ketopantoate reductase family protein -
  RHM61_RS07850 (RHM61_07850) - 1713067..1713978 (-) 912 WP_322250570.1 AraC family transcriptional regulator -
  RHM61_RS07855 (RHM61_07855) - 1714337..1714828 (+) 492 WP_322250571.1 antibiotic biosynthesis monooxygenase -
  RHM61_RS07860 (RHM61_07860) - 1715029..1715565 (+) 537 WP_322251064.1 DUF2058 domain-containing protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17622.82 Da        Isoelectric Point: 7.0150

>NTDB_id=876692 RHM61_RS07835 WP_322250567.1 1710746..1711243(+) (ssb) [Undibacterium sp. CCC3.4]
MASVNKVIIVGNLGRDPETRYMPSGDAMTSITVATTDSWKDKTTGEKKEQTEWHRITFFGKLAEIAGQYLKKGSQVYVEG
SLRTRKYTDKDGVEKYATDIKADSMQMLGGRPGMGGGAGMDDSGYGGGAPAPAAMQQRPAAPAARPAPAARPAPNFSDMD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=876692 RHM61_RS07835 WP_322250567.1 1710746..1711243(+) (ssb) [Undibacterium sp. CCC3.4]
ATGGCATCCGTGAATAAAGTCATCATCGTCGGCAATCTTGGCCGCGACCCGGAAACACGCTACATGCCAAGTGGTGACGC
GATGACCAGCATCACCGTCGCTACGACGGACAGCTGGAAAGACAAAACCACCGGCGAAAAGAAAGAACAGACAGAATGGC
ACCGGATCACGTTTTTCGGCAAATTAGCCGAAATCGCCGGCCAGTATCTGAAAAAAGGTTCGCAAGTGTATGTAGAAGGC
AGCTTGCGTACCCGTAAGTACACCGACAAAGATGGCGTCGAAAAATACGCAACCGACATCAAAGCCGACAGCATGCAAAT
GTTGGGTGGTCGTCCTGGCATGGGCGGCGGTGCCGGCATGGACGACAGCGGCTACGGCGGCGGCGCTCCGGCACCGGCAG
CTATGCAACAACGCCCGGCCGCTCCGGCTGCGCGTCCGGCCCCGGCAGCACGTCCGGCACCGAATTTTTCGGATATGGAT
GACGATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.247

100

0.564
  ssb Neisseria gonorrhoeae MS11

52.247

100

0.564
  ssb Neisseria meningitidis MC58

50.562

100

0.545
  ssb Glaesserella parasuis strain SC1401

50

100

0.545