Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RHM56_RS00285 Genome accession   NZ_CP133778
Coordinates   46172..46693 (+) Length   173 a.a.
NCBI ID   WP_322237345.1    Uniprot ID   -
Organism   Pseudomonas sp. CCC3.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 41172..51693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM56_RS00270 (RHM56_00270) bfr 41190..41654 (+) 465 WP_322237337.1 bacterioferritin -
  RHM56_RS00275 (RHM56_00275) uvrA 41738..44572 (-) 2835 WP_322237339.1 excinuclease ABC subunit UvrA -
  RHM56_RS00280 (RHM56_00280) - 44771..46162 (+) 1392 WP_322237343.1 MFS transporter -
  RHM56_RS00285 (RHM56_00285) ssb 46172..46693 (+) 522 WP_322237345.1 single-stranded DNA-binding protein Machinery gene
  RHM56_RS00290 (RHM56_00290) - 46928..49042 (+) 2115 WP_322237347.1 mechanosensitive ion channel family protein -
  RHM56_RS00295 (RHM56_00295) - 49188..50072 (+) 885 WP_322237350.1 sugar nucleotide-binding protein -
  RHM56_RS00300 (RHM56_00300) - 50065..50994 (+) 930 WP_322237353.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19374.47 Da        Isoelectric Point: 5.9314

>NTDB_id=876661 RHM56_RS00285 WP_322237345.1 46172..46693(+) (ssb) [Pseudomonas sp. CCC3.1]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQNQGGGNNYQQSAPRQQAQRPAPQQQQQQSRPAPQQQAPQP
APDFDSFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=876661 RHM56_RS00285 WP_322237345.1 46172..46693(+) (ssb) [Pseudomonas sp. CCC3.1]
ATGGCCCGTGGGGTTAACAAAGTTATATTGGTCGGCACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACTGACAAGCAAACTGGTCAAAAAGTCGAAAAGACTGAAT
GGCACCGTGTATCGATGTTCGGCAAAGTTGCCGAGATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAACTGCAAACCCGTGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACAGAAATCGTGGTCGATATGCAAGGCAC
CATGCAACTGCTGGGTGGCCGTCCACAGGGTGACCAACAAAACCAGGGCGGCGGTAACAACTACCAGCAATCCGCTCCGC
GTCAGCAGGCTCAACGCCCAGCGCCGCAACAGCAACAACAGCAGTCGCGTCCAGCGCCACAACAGCAGGCTCCACAGCCA
GCTCCGGATTTCGACAGCTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.091

100

0.601
  ssb Glaesserella parasuis strain SC1401

48.619

100

0.509
  ssb Neisseria meningitidis MC58

48.889

100

0.509
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.497