Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RHM62_RS00385 Genome accession   NZ_CP133777
Coordinates   73775..74269 (-) Length   164 a.a.
NCBI ID   WP_322123638.1    Uniprot ID   -
Organism   Actimicrobium sp. CCC2.4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 68775..79269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM62_RS00370 (RHM62_00370) - 69418..69966 (-) 549 WP_322123636.1 GNAT family protein -
  RHM62_RS00375 (RHM62_00375) - 70038..71555 (-) 1518 WP_322123637.1 HDOD domain-containing protein -
  RHM62_RS00380 (RHM62_00380) - 71552..73222 (-) 1671 WP_322125281.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  RHM62_RS00385 (RHM62_00385) ssb 73775..74269 (-) 495 WP_322123638.1 single-stranded DNA-binding protein Machinery gene
  RHM62_RS00390 (RHM62_00390) uvrA 74585..77443 (+) 2859 WP_322123639.1 excinuclease ABC subunit UvrA -
  RHM62_RS00395 (RHM62_00395) - 77479..78372 (-) 894 WP_322123640.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18102.28 Da        Isoelectric Point: 5.9567

>NTDB_id=876638 RHM62_RS00385 WP_322123638.1 73775..74269(-) (ssb) [Actimicrobium sp. CCC2.4]
MASINKVIIIGNLGRDPETRYMTNGDAVTNIAVATTESWKDKNSGEKKELTEWHRITFYRKLAEIAGQYLKKGSQVYIEG
KLQTRKWTDKENVERFTTEIIADTMQMLGSRQGMGGGGAMEDDYGSAPAPRQSAQPAQAASAPRQAPASRPAPNFSDMDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=876638 RHM62_RS00385 WP_322123638.1 73775..74269(-) (ssb) [Actimicrobium sp. CCC2.4]
ATGGCATCGATCAATAAAGTCATCATCATCGGCAACCTCGGCCGCGATCCTGAAACCCGCTACATGACCAACGGCGACGC
CGTCACCAACATTGCGGTCGCCACCACCGAAAGCTGGAAAGACAAGAACAGCGGCGAGAAAAAAGAACTCACCGAATGGC
ACCGCATCACCTTCTACCGCAAGCTCGCCGAGATCGCCGGCCAGTACCTGAAAAAAGGCTCGCAAGTCTATATCGAAGGC
AAGCTGCAAACCCGCAAATGGACCGACAAGGAAAACGTCGAGCGCTTCACCACCGAAATCATTGCTGACACGATGCAGAT
GCTCGGTAGCCGGCAAGGCATGGGTGGCGGCGGTGCAATGGAAGACGATTACGGCAGCGCCCCGGCACCACGCCAGAGTG
CCCAGCCGGCTCAGGCTGCGAGCGCGCCGCGCCAGGCACCGGCTTCCCGTCCGGCCCCGAATTTTTCGGATATGGATGAC
GACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.889

100

0.591
  ssb Glaesserella parasuis strain SC1401

50.556

100

0.555
  ssb Neisseria gonorrhoeae MS11

51.429

100

0.549
  ssb Neisseria meningitidis MC58

51.429

100

0.549