Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RHM64_RS21640 Genome accession   NZ_CP133776
Coordinates   4786853..4787389 (-) Length   178 a.a.
NCBI ID   WP_322166316.1    Uniprot ID   -
Organism   Pseudomonas sp. AH2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4781853..4792389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM64_RS21635 (RHM64_21635) - 4782467..4786507 (-) 4041 WP_322166315.1 Pls/PosA family non-ribosomal peptide synthetase -
  RHM64_RS21640 (RHM64_21640) ssb 4786853..4787389 (-) 537 WP_322166316.1 single-stranded DNA-binding protein Machinery gene
  RHM64_RS21645 (RHM64_21645) - 4787399..4788796 (-) 1398 WP_322166317.1 MFS transporter -
  RHM64_RS21650 (RHM64_21650) uvrA 4788926..4791769 (+) 2844 WP_322166318.1 excinuclease ABC subunit UvrA -
  RHM64_RS21655 (RHM64_21655) bfr 4791837..4792301 (-) 465 WP_322166319.1 bacterioferritin -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19751.87 Da        Isoelectric Point: 5.9455

>NTDB_id=876631 RHM64_RS21640 WP_322166316.1 4786853..4787389(-) (ssb) [Pseudomonas sp. AH2]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDGAPQGQGGNSNSAPRPQQQRPQQSSQPQQSQPQRESRPAPQQ
QAPQPAPDFDSFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=876631 RHM64_RS21640 WP_322166316.1 4786853..4787389(-) (ssb) [Pseudomonas sp. AH2]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAATGGACCGACAAACAAACCGGTCAGAAAGTCGAAAAGACTGAAT
GGCACCGTGTTTCGATGTTCGGCAAAGTCGCTGAAATCGCTGGCGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAG
GGCAAGCTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAAGGCAC
TATGCAACTGCTGGGCGGTCGCCCACAAGGCGACGGTGCTCCACAGGGTCAAGGCGGCAACAGCAACTCTGCGCCACGCC
CTCAACAGCAGCGTCCGCAGCAGTCATCGCAGCCGCAGCAATCCCAGCCACAACGCGAATCGCGTCCTGCTCCCCAGCAG
CAAGCGCCGCAACCGGCTCCGGATTTTGATAGTTTTGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.983

100

0.573
  ssb Neisseria meningitidis MC58

50

100

0.506
  ssb Neisseria gonorrhoeae MS11

50

100

0.506
  ssb Glaesserella parasuis strain SC1401

48.619

100

0.494