Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   RHM64_RS20500 Genome accession   NZ_CP133776
Coordinates   4544770..4546113 (+) Length   447 a.a.
NCBI ID   WP_322166110.1    Uniprot ID   -
Organism   Pseudomonas sp. AH2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4539770..4551113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM64_RS20475 (RHM64_20475) pgeF 4539965..4540690 (-) 726 WP_322166103.1 peptidoglycan editing factor PgeF -
  RHM64_RS20480 (RHM64_20480) rluD 4540699..4541661 (-) 963 WP_322166104.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RHM64_RS20485 (RHM64_20485) - 4541813..4542829 (+) 1017 WP_322166105.1 outer membrane protein assembly factor BamD -
  RHM64_RS20490 (RHM64_20490) - 4542946..4543185 (+) 240 WP_322166108.1 PP0621 family protein -
  RHM64_RS20495 (RHM64_20495) pilS 4543175..4544767 (+) 1593 WP_322166109.1 sensor histidine kinase Regulator
  RHM64_RS20500 (RHM64_20500) pilR 4544770..4546113 (+) 1344 WP_322166110.1 sigma-54 dependent transcriptional regulator Regulator
  RHM64_RS20505 (RHM64_20505) - 4546256..4546840 (+) 585 WP_416194726.1 transcriptional regulator -
  RHM64_RS20510 (RHM64_20510) - 4546833..4547262 (+) 430 Protein_4051 hypothetical protein -
  RHM64_RS20515 (RHM64_20515) thiO 4547325..4548431 (-) 1107 WP_322166111.1 glycine oxidase ThiO -
  RHM64_RS20520 (RHM64_20520) - 4548690..4549244 (+) 555 WP_322166112.1 GspH/FimT family pseudopilin -
  RHM64_RS20525 (RHM64_20525) pilV 4549235..4549771 (+) 537 WP_322166113.1 type IV pilus modification protein PilV -
  RHM64_RS20530 (RHM64_20530) - 4549771..4550571 (+) 801 WP_322166114.1 PilW family protein -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 50212.31 Da        Isoelectric Point: 5.9406

>NTDB_id=876629 RHM64_RS20500 WP_322166110.1 4544770..4546113(+) (pilR) [Pseudomonas sp. AH2]
MSPQQKILIVDDEPDIRELLEITLGRMKLDTRSARNVKEARDWLQREPFDLCLTDMRLPDGNGLELVQHIQQRYPQVPVA
MITAYGSLDTAINALKAGAFDFLTKPVDLTRLRELVASALRMHTPSGTENTFDSRLLGDSPPMRALRKQVSKLARSQAPI
YISGESGSGKELVARLIHEQGPRIDHPFVPVNCGAIPSELMESEFFGHRKGSFTGATEDKPGLFQAANGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRSVGGQQELVVDVRILCATHKDLNAEVAAGRFRQDLYYRLNVIELRVPSLRERREDIVQLTDS
ILRRLAEGSGQPAATLNAQALETLKSYRFPGNVRELENMLERAYTLCDNDRIEASDLRLIDTPSISGPGEHHLADINDLE
DYLESIERTLILQALEETRWNRTAAAQRLNLTFRSLRYRLKKLGLDD

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=876629 RHM64_RS20500 WP_322166110.1 4544770..4546113(+) (pilR) [Pseudomonas sp. AH2]
ATGAGCCCACAGCAAAAAATCCTGATCGTCGACGATGAACCGGACATCCGTGAACTGTTGGAAATCACCCTCGGACGGAT
GAAGCTCGACACCCGCAGCGCGCGCAACGTTAAAGAAGCCCGGGACTGGTTGCAGCGCGAACCTTTTGATTTATGCCTGA
CCGATATGCGACTGCCCGATGGCAATGGCCTGGAACTGGTGCAGCACATCCAGCAGCGTTATCCGCAAGTGCCAGTGGCC
ATGATCACCGCCTACGGCAGCCTTGATACAGCGATCAATGCGCTGAAAGCCGGGGCCTTCGACTTCCTGACCAAACCGGT
GGACCTCACTCGCCTTCGCGAGTTAGTGGCTAGCGCGTTGCGCATGCACACCCCCAGCGGGACCGAGAACACGTTCGACA
GCCGCCTGCTGGGCGATTCGCCGCCGATGCGGGCGCTACGCAAACAGGTCAGTAAATTGGCCCGCAGTCAGGCGCCCATT
TATATCAGTGGCGAATCGGGCAGCGGCAAAGAACTGGTGGCGCGCCTGATTCACGAACAAGGCCCGAGGATCGACCATCC
ATTTGTGCCGGTCAACTGCGGGGCAATTCCGTCTGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTTA
CCGGCGCGACTGAAGACAAACCAGGGCTCTTCCAAGCGGCCAACGGCGGGACGCTGTTCCTTGATGAAGTCGCGGATTTA
CCTTTGGCAATGCAAGTCAAACTGCTGCGGGCAATCCAGGAAAAAGCCGTGCGCAGCGTGGGCGGCCAGCAAGAACTGGT
CGTCGATGTGCGCATCCTATGCGCTACCCATAAAGACCTGAATGCCGAAGTTGCAGCCGGCCGTTTCCGTCAGGATTTGT
ACTACCGGCTGAACGTCATAGAATTGCGCGTGCCTTCGTTACGCGAACGCCGGGAAGACATCGTGCAACTGACTGACAGC
ATTCTCCGGCGATTGGCTGAAGGGTCGGGCCAGCCTGCTGCCACGCTCAACGCCCAAGCGCTGGAAACCCTGAAAAGCTA
TCGCTTTCCGGGCAACGTGCGCGAACTTGAGAACATGCTAGAGCGTGCCTACACCCTGTGCGATAACGACCGAATCGAAG
CCAGCGACTTGCGCCTCATAGACACTCCCAGCATCAGCGGTCCCGGCGAACACCACTTGGCCGACATCAACGACCTGGAA
GACTATCTGGAAAGCATCGAACGCACGCTGATCCTGCAAGCCTTGGAAGAAACCCGCTGGAACCGCACTGCCGCCGCGCA
ACGCCTGAACCTTACGTTTCGCTCGTTAAGGTATCGGTTGAAGAAGTTGGGGTTGGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

81.264

99.105

0.805
  pilR Acinetobacter baumannii strain A118

48.927

100

0.51
  luxO Vibrio cholerae strain A1552

37.584

100

0.376