Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RE409_RS27625 Genome accession   NZ_CP133763
Coordinates   5687937..5688467 (-) Length   176 a.a.
NCBI ID   WP_201187743.1    Uniprot ID   -
Organism   Peribacillus sp. R9-11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5682937..5693467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE409_RS27605 (RE409_27610) rplI 5683978..5684427 (-) 450 WP_098177048.1 50S ribosomal protein L9 -
  RE409_RS27610 (RE409_27615) - 5684424..5686394 (-) 1971 WP_056521986.1 DHH family phosphoesterase -
  RE409_RS27615 (RE409_27620) - 5686430..5687371 (-) 942 WP_201187741.1 YybS family protein -
  RE409_RS27620 (RE409_27625) rpsR 5687650..5687889 (-) 240 WP_053348323.1 30S ribosomal protein S18 -
  RE409_RS27625 (RE409_27630) ssbA 5687937..5688467 (-) 531 WP_201187743.1 single-stranded DNA-binding protein Machinery gene
  RE409_RS27630 (RE409_27635) rpsF 5688537..5688821 (-) 285 WP_056521977.1 30S ribosomal protein S6 -
  RE409_RS27635 (RE409_27640) ychF 5689030..5690130 (-) 1101 WP_201187745.1 redox-regulated ATPase YchF -
  RE409_RS27640 (RE409_27645) - 5690298..5690495 (-) 198 WP_201187747.1 DUF951 domain-containing protein -
  RE409_RS27645 (RE409_27650) - 5690517..5691353 (-) 837 WP_056521973.1 mechanosensitive ion channel family protein -
  RE409_RS27650 (RE409_27655) yyaC 5691746..5692381 (+) 636 WP_201187749.1 spore protease YyaC -
  RE409_RS27655 (RE409_27660) - 5692450..5693151 (-) 702 WP_201188162.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19493.17 Da        Isoelectric Point: 4.8282

>NTDB_id=876550 RE409_RS27625 WP_201187743.1 5687937..5688467(-) (ssbA) [Peribacillus sp. R9-11]
MMNRVVLVGRLTKDPELRYTPNGVPVATFTLAVNRSFTNQSGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
NYEGQDGKRVYVTEILAESVQFLEPRSSSAGERNEGGSYGGGQKSYSNNNNGNDNNSYGQNPNQNQRSNNNYTRVDDDPF
ANDGKTIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=876550 RE409_RS27625 WP_201187743.1 5687937..5688467(-) (ssbA) [Peribacillus sp. R9-11]
ATGATGAATCGCGTAGTTTTGGTAGGACGCTTAACTAAAGATCCTGAATTACGATATACACCTAATGGAGTTCCTGTGGC
TACCTTTACTTTGGCTGTGAACCGTAGTTTTACGAATCAGTCGGGTGAACGTGAAGCAGATTTCATTAACTGTGTAGTTT
GGCGTAAACCGGCAGAAAATGTAGCTAACTTCTTGAAAAAAGGCAGTTTAGCTGGCGTGGATGGACGTGTCCAAACACGT
AATTATGAAGGACAAGACGGCAAACGAGTATATGTGACGGAGATTCTGGCTGAGAGCGTTCAATTCCTTGAACCACGAAG
CAGTTCAGCGGGTGAAAGAAATGAAGGCGGTTCTTACGGTGGAGGTCAAAAAAGTTATAGCAACAATAATAACGGAAATG
ACAACAATTCGTATGGACAAAATCCTAATCAGAATCAACGGAGCAACAACAACTACACTCGTGTAGATGATGATCCATTT
GCAAATGACGGTAAAACAATCGACATTTCAGATGATGATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.715

100

0.699
  ssb Latilactobacillus sakei subsp. sakei 23K

56.742

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

60.227

0.381
  ssb Glaesserella parasuis strain SC1401

35.829

100

0.381