Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   MCIT9_RS11840 Genome accession   NZ_AP024714
Coordinates   2344396..2345763 (+) Length   455 a.a.
NCBI ID   WP_317705084.1    Uniprot ID   A0AAU9C9I7
Organism   Methylomarinovum caldicuralii strain IT-9     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2339396..2350763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCIT9_RS11825 (MIT9_P2277) sucD 2340691..2341560 (-) 870 WP_317705081.1 succinate--CoA ligase subunit alpha -
  MCIT9_RS11830 (MIT9_P2278) sucC 2341557..2342729 (-) 1173 WP_317705082.1 ADP-forming succinate--CoA ligase subunit beta -
  MCIT9_RS11835 (MIT9_P2279) - 2342795..2344399 (+) 1605 WP_317705083.1 ATP-binding protein -
  MCIT9_RS11840 (MIT9_P2280) pilR 2344396..2345763 (+) 1368 WP_317705084.1 sigma-54 dependent transcriptional regulator Regulator
  MCIT9_RS11845 (MIT9_P2281) - 2345861..2346121 (+) 261 WP_317705085.1 helix-hairpin-helix domain-containing protein -
  MCIT9_RS11850 (MIT9_P2282) - 2346165..2346491 (-) 327 WP_317705086.1 integration host factor subunit alpha -
  MCIT9_RS11855 (MIT9_P2283) pheT 2346496..2348886 (-) 2391 WP_317705087.1 phenylalanine--tRNA ligase subunit beta -
  MCIT9_RS11860 (MIT9_P2284) pheS 2348899..2349918 (-) 1020 WP_317705088.1 phenylalanine--tRNA ligase subunit alpha -
  MCIT9_RS11865 (MIT9_P2285) rplT 2349925..2350278 (-) 354 WP_317705089.1 50S ribosomal protein L20 -
  MCIT9_RS11870 (MIT9_P2286) rpmI 2350320..2350517 (-) 198 WP_317705090.1 50S ribosomal protein L35 -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50421.03 Da        Isoelectric Point: 6.4271

>NTDB_id=87652 MCIT9_RS11840 WP_317705084.1 2344396..2345763(+) (pilR) [Methylomarinovum caldicuralii strain IT-9]
MNQATALVVDDEPDILELLELTLARMNVQARCAATLEEAKTWLGREPFQLCLTDMRLPDGDGIDLVAYIQERFPNLPVAV
ITAHGNMEAAVRALKCGAFDFVSKPVDLQILRKLVGSAIQLTDAESPRDRRSRDVLLGDSAPMRDIRGKIVRLARTQAPV
FIHGESGTGKELVARLIHAKSPRAGKPFVAVNCGAIPAELMESEFFGHKKGSFSGAVADHPGLFQAADGGTLFLDEVADL
PLHLQVKLLRAIQEKRVRPVGGHEEIPVDVRILSATHKDLKALVDEGRFRQDLYYRINVIELTVPPLRQRREDIPLMADR
ILNRIARDNGLPPLKLTERAFKTLCRYDFPGNVRELENILERAAALCEGEVLDADDLHLPSASAPVSTIPSEAGTPLPEG
PFSLEDYLGEIERRAILDALAQTRWNRSKAARRLGMTLRQLKYRLQKWGLDGGED

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=87652 MCIT9_RS11840 WP_317705084.1 2344396..2345763(+) (pilR) [Methylomarinovum caldicuralii strain IT-9]
ATGAATCAAGCCACCGCCCTTGTCGTCGACGACGAACCGGACATCCTCGAACTGCTGGAACTGACGCTCGCGCGCATGAA
CGTCCAGGCCCGCTGCGCCGCCACCCTGGAAGAGGCCAAGACCTGGCTCGGCCGGGAACCCTTCCAGCTCTGTCTCACCG
ACATGCGCCTGCCGGACGGCGACGGCATCGACCTGGTCGCCTACATCCAGGAACGCTTCCCCAACCTCCCGGTGGCGGTC
ATCACCGCCCACGGCAACATGGAGGCGGCGGTGCGGGCACTGAAATGCGGGGCCTTCGATTTCGTCTCCAAACCGGTGGA
CCTGCAGATCCTGCGCAAACTGGTGGGCAGCGCCATCCAGCTGACCGACGCCGAATCCCCCCGGGACCGCCGTTCCCGCG
ATGTCCTCCTGGGGGATTCGGCGCCGATGCGCGACATCCGCGGCAAGATCGTCAGGCTGGCGCGCACCCAGGCGCCGGTG
TTCATTCACGGCGAATCCGGTACCGGCAAGGAGCTGGTGGCCCGCTTGATCCACGCCAAGAGCCCGCGGGCCGGCAAGCC
CTTCGTCGCCGTCAACTGCGGCGCCATTCCGGCGGAACTAATGGAAAGCGAATTCTTCGGCCACAAGAAGGGGAGCTTTT
CCGGCGCGGTCGCCGACCATCCCGGCCTGTTCCAGGCCGCCGACGGCGGTACCCTGTTTCTCGACGAGGTTGCCGACCTG
CCTCTGCACCTGCAAGTCAAGCTACTGCGGGCGATCCAGGAAAAGCGCGTCCGCCCGGTCGGCGGCCATGAGGAAATCCC
CGTGGACGTACGCATCCTCTCGGCCACCCACAAAGATCTGAAAGCCCTGGTGGACGAGGGCCGCTTCCGCCAGGATCTGT
ATTACCGCATCAACGTCATCGAACTGACCGTCCCCCCCCTGCGTCAGCGCCGCGAGGACATTCCCCTGATGGCCGACCGC
ATCCTCAACCGTATCGCTCGCGATAACGGCCTGCCCCCCCTTAAGCTTACCGAACGCGCCTTCAAGACGCTGTGCCGTTA
CGACTTCCCGGGCAACGTCCGCGAACTGGAAAATATCCTGGAACGGGCCGCCGCTCTGTGCGAGGGGGAAGTCCTCGACG
CCGACGATCTGCATCTTCCGAGCGCCTCGGCGCCTGTCTCCACCATCCCCTCAGAGGCGGGCACGCCCCTGCCCGAGGGT
CCCTTCTCGCTGGAGGATTATCTGGGGGAAATCGAGCGCCGCGCCATCCTCGACGCCCTGGCGCAGACCCGCTGGAACCG
CTCCAAGGCCGCCCGTCGCCTGGGGATGACCCTGCGGCAACTCAAATACCGGTTGCAGAAATGGGGGCTCGACGGCGGGG
AGGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(408-448)

Response regulator receiver domain (Response_reg)

(7-114)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.996

99.78

0.629
  pilR Acinetobacter baumannii strain A118

49.462

100

0.505
  luxO Vibrio cholerae strain A1552

37.778

98.901

0.374

Multiple sequence alignment