Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   RG644_RS10100 Genome accession   NZ_CP133751
Coordinates   2162764..2163321 (-) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain ZYPA1927     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2157764..2168321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG644_RS10085 (RG644_10085) pilY1 2157856..2161347 (-) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  RG644_RS10090 (RG644_10090) pilX 2161359..2161946 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  RG644_RS10095 (RG644_10095) pilW 2161943..2162767 (-) 825 WP_023114841.1 type 4a pilus minor pilin PilW -
  RG644_RS10100 (RG644_10100) pilV 2162764..2163321 (-) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  RG644_RS10105 (RG644_10105) - 2163312..2163818 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  RG644_RS10110 (RG644_10110) - 2163924..2164433 (-) 510 WP_023088572.1 Tfp pilus assembly protein FimT/FimU -
  RG644_RS10115 (RG644_10115) thiO 2164568..2165662 (+) 1095 WP_191519341.1 glycine oxidase ThiO -
  RG644_RS10120 (RG644_10120) pilR 2165708..2167045 (-) 1338 WP_003110427.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=876272 RG644_RS10100 WP_003094697.1 2162764..2163321(-) (pilV) [Pseudomonas aeruginosa strain ZYPA1927]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=876272 RG644_RS10100 WP_003094697.1 2162764..2163321(-) (pilV) [Pseudomonas aeruginosa strain ZYPA1927]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAAGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACATCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978