Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RFN66_RS23300 Genome accession   NZ_CP133705
Coordinates   4519538..4520050 (-) Length   170 a.a.
NCBI ID   WP_003178024.1    Uniprot ID   A0A6I1MGI1
Organism   Bacillus paralicheniformis strain CP47     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4514538..4525050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN66_RS23270 (RFN66_23270) - 4514931..4515071 (-) 141 WP_020453636.1 hypothetical protein -
  RFN66_RS23275 (RFN66_23275) - 4515231..4515707 (+) 477 WP_023856805.1 spore coat protein -
  RFN66_RS23280 (RFN66_23280) - 4515750..4516169 (-) 420 WP_020453638.1 universal stress protein -
  RFN66_RS23285 (RFN66_23285) - 4516187..4517653 (-) 1467 WP_020453639.1 SulP family inorganic anion transporter -
  RFN66_RS23290 (RFN66_23290) - 4517868..4519169 (+) 1302 WP_023856804.1 MFS transporter -
  RFN66_RS23295 (RFN66_23295) rpsR 4519247..4519486 (-) 240 WP_003178022.1 30S ribosomal protein S18 -
  RFN66_RS23300 (RFN66_23300) ssbA 4519538..4520050 (-) 513 WP_003178024.1 single-stranded DNA-binding protein SsbA Machinery gene
  RFN66_RS23305 (RFN66_23305) rpsF 4520097..4520384 (-) 288 WP_020453642.1 30S ribosomal protein S6 -
  RFN66_RS23310 (RFN66_23310) ychF 4520498..4521598 (-) 1101 WP_020453643.1 redox-regulated ATPase YchF -
  RFN66_RS23315 (RFN66_23315) - 4521780..4521986 (-) 207 WP_011201785.1 DUF951 domain-containing protein -
  RFN66_RS23320 (RFN66_23320) - 4522074..4523087 (-) 1014 WP_023856802.1 GerAB/ArcD/ProY family transporter -
  RFN66_RS23325 (RFN66_23325) yyaC 4523391..4524008 (+) 618 WP_020453645.1 spore protease YyaC -
  RFN66_RS23330 (RFN66_23330) - 4524045..4524893 (-) 849 WP_020453646.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18373.01 Da        Isoelectric Point: 4.9367

>NTDB_id=875946 RFN66_RS23300 WP_003178024.1 4519538..4520050(-) (ssbA) [Bacillus paralicheniformis strain CP47]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQQGQRVYVTEVQAESVQFLEPKGGGSGSGGYSGGQGGQHFGGGQNEPAPFGGSQNNQNRNQGNSFNDDPFANDGKP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=875946 RFN66_RS23300 WP_003178024.1 4519538..4520050(-) (ssbA) [Bacillus paralicheniformis strain CP47]
ATGCTTAACCGAGTTGTTTTAGTCGGCAGACTGACAAAGGACCCAGAGCTTCGTTATACTCCAAGCGGTGCAGCTGTTGC
CACCTTTACGCTTGCTGTCAATCGTACGTTTACGAATCAGCAGGGTGAACGTGAAGCTGATTTCATCAACTGTGTTGTCT
GGAGAAGACAAGCCGAAAACGTTGCGAATTTCCTTAAAAAGGGAAGTCTTGCGGGTGTAGATGGACGTTTGCAAACGCGC
AGCTATGAAAATCAGCAAGGACAGCGTGTATACGTTACGGAAGTTCAAGCTGAAAGTGTTCAATTTCTGGAGCCTAAAGG
CGGCGGTTCTGGTTCAGGCGGTTACAGCGGAGGCCAGGGAGGCCAACACTTTGGCGGCGGACAGAATGAACCGGCTCCAT
TCGGCGGCAGTCAAAACAATCAGAATCGCAATCAAGGCAACAGCTTCAATGACGATCCATTCGCAAACGATGGAAAGCCG
ATTGACATCTCTGATGACGACTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MGI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.302

100

0.853
  ssb Latilactobacillus sakei subsp. sakei 23K

58.96

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

35.326

100

0.382