Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | RFN65_RS08480 | Genome accession | NZ_CP133703 |
| Coordinates | 1649619..1650689 (+) | Length | 356 a.a. |
| NCBI ID | WP_015483431.1 | Uniprot ID | - |
| Organism | Bacillus subtilis strain CP35 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1644619..1655689
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RFN65_RS08450 (RFN65_08450) | yqgY | 1644815..1645060 (-) | 246 | WP_003226300.1 | DUF2626 domain-containing protein | - |
| RFN65_RS08455 (RFN65_08455) | mgsR | 1645292..1645672 (+) | 381 | WP_003230147.1 | transcriptional regulator MgsR | - |
| RFN65_RS08465 (RFN65_08465) | rsbRD | 1645896..1646732 (+) | 837 | WP_015384093.1 | RsbT co-antagonist protein RsbRD | - |
| RFN65_RS08470 (RFN65_08470) | yqhB | 1646785..1648113 (-) | 1329 | WP_309530234.1 | hemolysin family protein | - |
| RFN65_RS08475 (RFN65_08475) | corA | 1648256..1649209 (+) | 954 | WP_309530235.1 | magnesium transporter CorA | - |
| RFN65_RS08480 (RFN65_08480) | comGA | 1649619..1650689 (+) | 1071 | WP_015483431.1 | competence protein ComGA | Machinery gene |
| RFN65_RS08485 (RFN65_08485) | comGB | 1650676..1651713 (+) | 1038 | WP_047182873.1 | comG operon protein ComGB | Machinery gene |
| RFN65_RS08490 (RFN65_08490) | comGC | 1651727..1652023 (+) | 297 | WP_014477332.1 | comG operon protein ComGC | Machinery gene |
| RFN65_RS08495 (RFN65_08495) | comGD | 1652013..1652444 (+) | 432 | WP_015384089.1 | comG operon protein ComGD | Machinery gene |
| RFN65_RS08500 (RFN65_08500) | comGE | 1652428..1652775 (+) | 348 | WP_063335293.1 | ComG operon protein 5 | Machinery gene |
| RFN65_RS08505 (RFN65_08505) | comGF | 1652801..1653184 (+) | 384 | WP_063335292.1 | ComG operon protein ComGF | Machinery gene |
| RFN65_RS08510 (RFN65_08510) | comGG | 1653185..1653559 (+) | 375 | WP_014480253.1 | ComG operon protein ComGG | Machinery gene |
| RFN65_RS08515 (RFN65_08515) | spoIITA | 1653631..1653810 (+) | 180 | WP_003230176.1 | YqzE family protein | - |
| RFN65_RS08520 (RFN65_08520) | yqzG | 1653852..1654178 (-) | 327 | WP_047183570.1 | YqzG/YhdC family protein | - |
| RFN65_RS08525 (RFN65_08525) | tapA | 1654448..1655209 (+) | 762 | WP_063335290.1 | amyloid fiber anchoring/assembly protein TapA | - |
Sequence
Protein
Download Length: 356 a.a. Molecular weight: 40458.64 Da Isoelectric Point: 9.0175
>NTDB_id=875826 RFN65_RS08480 WP_015483431.1 1649619..1650689(+) (comGA) [Bacillus subtilis strain CP35]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYITTNNYDRWVYHEKD
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYITTNNYDRWVYHEKD
Nucleotide
Download Length: 1071 bp
>NTDB_id=875826 RFN65_RS08480 WP_015483431.1 1649619..1650689(+) (comGA) [Bacillus subtilis strain CP35]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATCGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGTGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGGCTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCATTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGATCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTGACGAGCCTTCAT
ACGAGAGATGCAAAGGGCGCGATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTAGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGCCAGTCAC
GAAATACCAGGAGAGCTAGCGTTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATATAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATCGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGTGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGGCTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCATTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGATCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTGACGAGCCTTCAT
ACGAGAGATGCAAAGGGCGCGATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTAGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGCCAGTCAC
GAAATACCAGGAGAGCTAGCGTTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATATAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
99.719 |
100 |
0.997 |
| pilF | Thermus thermophilus HB27 |
36.827 |
99.157 |
0.365 |