Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | RFN65_RS08485 | Genome accession | NZ_CP133703 |
| Coordinates | 1650676..1651713 (+) | Length | 345 a.a. |
| NCBI ID | WP_047182873.1 | Uniprot ID | - |
| Organism | Bacillus subtilis strain CP35 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1645676..1656713
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RFN65_RS08465 (RFN65_08465) | rsbRD | 1645896..1646732 (+) | 837 | WP_015384093.1 | RsbT co-antagonist protein RsbRD | - |
| RFN65_RS08470 (RFN65_08470) | yqhB | 1646785..1648113 (-) | 1329 | WP_309530234.1 | hemolysin family protein | - |
| RFN65_RS08475 (RFN65_08475) | corA | 1648256..1649209 (+) | 954 | WP_309530235.1 | magnesium transporter CorA | - |
| RFN65_RS08480 (RFN65_08480) | comGA | 1649619..1650689 (+) | 1071 | WP_015483431.1 | competence protein ComGA | Machinery gene |
| RFN65_RS08485 (RFN65_08485) | comGB | 1650676..1651713 (+) | 1038 | WP_047182873.1 | comG operon protein ComGB | Machinery gene |
| RFN65_RS08490 (RFN65_08490) | comGC | 1651727..1652023 (+) | 297 | WP_014477332.1 | comG operon protein ComGC | Machinery gene |
| RFN65_RS08495 (RFN65_08495) | comGD | 1652013..1652444 (+) | 432 | WP_015384089.1 | comG operon protein ComGD | Machinery gene |
| RFN65_RS08500 (RFN65_08500) | comGE | 1652428..1652775 (+) | 348 | WP_063335293.1 | ComG operon protein 5 | Machinery gene |
| RFN65_RS08505 (RFN65_08505) | comGF | 1652801..1653184 (+) | 384 | WP_063335292.1 | ComG operon protein ComGF | Machinery gene |
| RFN65_RS08510 (RFN65_08510) | comGG | 1653185..1653559 (+) | 375 | WP_014480253.1 | ComG operon protein ComGG | Machinery gene |
| RFN65_RS08515 (RFN65_08515) | spoIITA | 1653631..1653810 (+) | 180 | WP_003230176.1 | YqzE family protein | - |
| RFN65_RS08520 (RFN65_08520) | yqzG | 1653852..1654178 (-) | 327 | WP_047183570.1 | YqzG/YhdC family protein | - |
| RFN65_RS08525 (RFN65_08525) | tapA | 1654448..1655209 (+) | 762 | WP_063335290.1 | amyloid fiber anchoring/assembly protein TapA | - |
| RFN65_RS08530 (RFN65_08530) | sipW | 1655193..1655765 (+) | 573 | WP_080030740.1 | signal peptidase I SipW | - |
| RFN65_RS08535 (RFN65_08535) | tasA | 1655829..1656614 (+) | 786 | WP_003230183.1 | biofilm matrix protein TasA | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 39738.15 Da Isoelectric Point: 9.6257
>NTDB_id=875827 RFN65_RS08485 WP_047182873.1 1650676..1651713(+) (comGB) [Bacillus subtilis strain CP35]
MKKIRKVWSLKDQARLLKRLGEMTAGGYTLLDGLRLMELQMNKRQAADLTDTVTCLREGAPFYQVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQSDQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLALFTAGIGIYYWLVFKKKSPARQMLICVRIPLIGKLVKLFNSYFFSLQLSSLLKSGLSIYDSLNAFKHQT
FLPFYRCEAEQLIERLKAGESIEAAICGSPFYEVDFSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLVPMYQMMNQM
MKKIRKVWSLKDQARLLKRLGEMTAGGYTLLDGLRLMELQMNKRQAADLTDTVTCLREGAPFYQVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQSDQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLALFTAGIGIYYWLVFKKKSPARQMLICVRIPLIGKLVKLFNSYFFSLQLSSLLKSGLSIYDSLNAFKHQT
FLPFYRCEAEQLIERLKAGESIEAAICGSPFYEVDFSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLVPMYQMMNQM
Nucleotide
Download Length: 1038 bp
>NTDB_id=875827 RFN65_RS08485 WP_047182873.1 1650676..1651713(+) (comGB) [Bacillus subtilis strain CP35]
ATGAAAAAGATTAGAAAAGTCTGGTCGTTAAAGGATCAAGCCAGGTTATTAAAGCGGCTTGGTGAAATGACTGCGGGCGG
ATATACGCTTCTGGATGGATTACGCCTGATGGAACTTCAGATGAATAAGAGGCAGGCTGCTGACTTGACTGATACGGTCA
CTTGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTACTAAAGAGTTTGTCATTTCATAAGGAAGCCGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCCGCTTCCATGATCCAGAGCGGAGAGCTGCTGGAACGAAAAATTGCACAGTCAGA
CCAGCTGAAAAGAGTGCTGCGCTATCCGCTTTTCCTCATTTTTACGGTCGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAGTTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGTTGGCTCTTTTTACAGCAGGTATCGGGATTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTGATTTGTGTCAGGATTCCTTTGATTGGAAAGCTTGTCAAGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCGGGCCTCTCAATTTATGACAGCCTTAATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCTGAACAATTGATTGAACGGCTAAAAGCCGGTGAGTCAATTGAAGCCGCTATTTG
TGGAAGCCCTTTTTATGAAGTTGATTTTTCAAAAGTCATATCTCACGGCCAGCTGAGCGGCCGATTGGATCGAGAGCTTT
TCACATACAGCCAGTTCATATTGCAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCGATGATTTAT
GGATTTGTTGCAGCGATGATCTTACTTGTGTATTTATCTATGCTTGTGCCTATGTATCAGATGATGAATCAAATGTGA
ATGAAAAAGATTAGAAAAGTCTGGTCGTTAAAGGATCAAGCCAGGTTATTAAAGCGGCTTGGTGAAATGACTGCGGGCGG
ATATACGCTTCTGGATGGATTACGCCTGATGGAACTTCAGATGAATAAGAGGCAGGCTGCTGACTTGACTGATACGGTCA
CTTGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTACTAAAGAGTTTGTCATTTCATAAGGAAGCCGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCCGCTTCCATGATCCAGAGCGGAGAGCTGCTGGAACGAAAAATTGCACAGTCAGA
CCAGCTGAAAAGAGTGCTGCGCTATCCGCTTTTCCTCATTTTTACGGTCGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAGTTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGTTGGCTCTTTTTACAGCAGGTATCGGGATTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTGATTTGTGTCAGGATTCCTTTGATTGGAAAGCTTGTCAAGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCGGGCCTCTCAATTTATGACAGCCTTAATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCTGAACAATTGATTGAACGGCTAAAAGCCGGTGAGTCAATTGAAGCCGCTATTTG
TGGAAGCCCTTTTTATGAAGTTGATTTTTCAAAAGTCATATCTCACGGCCAGCTGAGCGGCCGATTGGATCGAGAGCTTT
TCACATACAGCCAGTTCATATTGCAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCGATGATTTAT
GGATTTGTTGCAGCGATGATCTTACTTGTGTATTTATCTATGCTTGTGCCTATGTATCAGATGATGAATCAAATGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
97.214 |
93.623 |
0.91 |