Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WD888_RS14850 Genome accession   NZ_CP149815
Coordinates   3035420..3036049 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain EP91A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3030420..3041049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WD888_RS14835 (WD888_14835) helD 3030662..3032716 (-) 2055 WP_001305911.1 DNA helicase IV -
  WD888_RS14840 (WD888_14840) yccF 3032839..3033285 (+) 447 WP_001261235.1 YccF domain-containing protein -
  WD888_RS14845 (WD888_14845) yccS 3033295..3035457 (+) 2163 WP_000875041.1 YccS family putative transporter -
  WD888_RS14850 (WD888_14850) sxy/tfoX 3035420..3036049 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WD888_RS14855 (WD888_14855) sulA 3036268..3036777 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  WD888_RS14860 (WD888_14860) ompA 3037133..3038173 (+) 1041 WP_001309394.1 porin OmpA -
  WD888_RS14865 (WD888_14865) matP 3038249..3038701 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  WD888_RS14870 (WD888_14870) ycbZ 3038887..3040647 (+) 1761 WP_000156482.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=875830 WD888_RS14850 WP_000839153.1 3035420..3036049(-) (sxy/tfoX) [Escherichia coli strain EP91A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=875830 WD888_RS14850 WP_000839153.1 3035420..3036049(-) (sxy/tfoX) [Escherichia coli strain EP91A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1