Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RG306_RS19965 Genome accession   NZ_CP133666
Coordinates   4306034..4306618 (-) Length   194 a.a.
NCBI ID   WP_004826134.1    Uniprot ID   A0A0A8TNZ3
Organism   Acinetobacter bereziniae strain UCO-553     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4301034..4311618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG306_RS19940 (RG306_19940) - 4301661..4302584 (+) 924 WP_005035221.1 LysR substrate-binding domain-containing protein -
  RG306_RS19945 (RG306_19945) ahpC 4302650..4303213 (-) 564 WP_005035218.1 alkyl hydroperoxide reductase subunit C -
  RG306_RS19950 (RG306_19950) - 4303413..4303748 (+) 336 WP_004826157.1 hypothetical protein -
  RG306_RS19955 (RG306_19955) - 4303922..4304797 (-) 876 WP_005035215.1 AraC family transcriptional regulator -
  RG306_RS19960 (RG306_19960) - 4304980..4305885 (+) 906 WP_005035213.1 DMT family transporter -
  RG306_RS19965 (RG306_19965) ssb 4306034..4306618 (-) 585 WP_004826134.1 single-stranded DNA-binding protein Machinery gene
  RG306_RS19970 (RG306_19970) - 4306670..4308034 (-) 1365 WP_010590905.1 MFS transporter -
  RG306_RS19975 (RG306_19975) - 4308174..4309256 (-) 1083 WP_010590906.1 DUF475 domain-containing protein -
  RG306_RS19980 (RG306_19980) tenA 4309494..4310165 (+) 672 WP_005035207.1 thiaminase II -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21381.08 Da        Isoelectric Point: 6.4839

>NTDB_id=875781 RG306_RS19965 WP_004826134.1 4306034..4306618(-) (ssb) [Acinetobacter bereziniae strain UCO-553]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNSGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEAGENGGYNQPRFNNNQQGGFNNNQGGGYNQGNQGGYGNAAPQGG
YGNGGNNVNQGFQSPKPQQAPATAPADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=875781 RG306_RS19965 WP_004826134.1 4306034..4306618(-) (ssb) [Acinetobacter bereziniae strain UCO-553]
ATGCGTGGTGTAAATAAAGTTATTTTAGTTGGTACTTTGGGTCGTGATCCTGAGACGAAAACATTCCCAAATGGGGGGTC
TCTCACTCAATTTTCAATAGCGACCAGTGAATCTTGGACAGATAAAAATTCCGGAGAAAGAAAAGAACAAACGGAATGGC
ATCGTATTGTATTGCATAACCGCCTAGGTGAAATTGCACAGCAATATTTACGTAAAGGCTCGAAAGTTTATATTGAGGGT
TCTTTACGTACACGTCAGTGGACAGATCAAAATGGTCAAGAACGCTACACAACGGAAATCCGTGGTGAGCAAATGCAGAT
GTTGGATAACAACCGTCAACAAGGTGAAGCAGGTGAAAACGGGGGCTATAACCAACCACGTTTCAATAACAATCAACAAG
GTGGTTTTAATAACAACCAAGGTGGTGGTTATAATCAAGGCAACCAAGGTGGCTATGGTAATGCAGCTCCACAAGGTGGT
TATGGCAATGGTGGAAACAATGTTAATCAGGGTTTCCAGTCGCCTAAACCGCAACAAGCGCCGGCAACTGCTCCAGCAGA
TTTAGATGATGATCTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8TNZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.98

100

0.536
  ssb Vibrio cholerae strain A1552

44.776

100

0.464
  ssb Neisseria gonorrhoeae MS11

38.889

100

0.397
  ssb Neisseria meningitidis MC58

38.889

100

0.397