Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABK23_RS05600 Genome accession   NZ_AP027576
Coordinates   1174645..1175160 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain LR-62-2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1169645..1180160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK23_RS05555 (VEE29_10710) csrA 1170502..1170687 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AABK23_RS05585 (VEE29_10720) yqaB 1171875..1172441 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AABK23_RS05590 (VEE29_10730) yqaA 1172438..1172866 (+) 429 WP_001287454.1 YqaA family protein -
  AABK23_RS05595 (VEE29_10740) gshA 1172939..1174495 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  AABK23_RS05600 (VEE29_10750) luxS 1174645..1175160 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AABK23_RS05605 (VEE29_10760) emrB 1175224..1176762 (-) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  AABK23_RS05610 (VEE29_10770) emrA 1176779..1177951 (-) 1173 WP_022646013.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AABK23_RS05615 (VEE29_10780) emrR 1178078..1178608 (-) 531 WP_000378441.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AABK23_RS05620 (VEE29_10790) ygaH 1178699..1179034 (-) 336 WP_000119759.1 L-valine transporter subunit YgaH -
  AABK23_RS05625 (VEE29_10800) ygaZ 1179024..1179761 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=87576 AABK23_RS05600 WP_001130211.1 1174645..1175160(+) (luxS) [Escherichia coli strain LR-62-2]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=87576 AABK23_RS05600 WP_001130211.1 1174645..1175160(+) (luxS) [Escherichia coli strain LR-62-2]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment