Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   RG306_RS01665 Genome accession   NZ_CP133666
Coordinates   361641..362393 (+) Length   250 a.a.
NCBI ID   WP_004825387.1    Uniprot ID   A0A0A8TTL1
Organism   Acinetobacter bereziniae strain UCO-553     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 356641..367393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG306_RS01650 (RG306_01650) ponA 357241..359781 (-) 2541 WP_005034348.1 penicillin-binding protein PBP1a -
  RG306_RS01655 (RG306_01655) comM 359945..361003 (+) 1059 WP_005034346.1 pilus assembly protein PilM Machinery gene
  RG306_RS01660 (RG306_01660) pilN 361003..361644 (+) 642 WP_004825390.1 PilN domain-containing protein Machinery gene
  RG306_RS01665 (RG306_01665) comO 361641..362393 (+) 753 WP_004825387.1 type 4a pilus biogenesis protein PilO Machinery gene
  RG306_RS01670 (RG306_01670) comL 362390..362920 (+) 531 WP_005034344.1 pilus assembly protein PilP Machinery gene
  RG306_RS01675 (RG306_01675) pilQ 362941..365112 (+) 2172 WP_005034341.1 type IV pilus secretin PilQ Machinery gene
  RG306_RS01680 (RG306_01680) aroK 365149..365691 (+) 543 WP_004825383.1 shikimate kinase AroK -
  RG306_RS01685 (RG306_01685) aroB 365728..366807 (+) 1080 WP_005034338.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 28361.04 Da        Isoelectric Point: 4.9789

>NTDB_id=875749 RG306_RS01665 WP_004825387.1 361641..362393(+) (comO) [Acinetobacter bereziniae strain UCO-553]
MSREDFEQLDSSVNDAPKKNKMTVEKFFQQFNTLDMNNYGSWPLSVKITCWIFLFFVVCAIGYFLAVRPKLDAIDQARTV
EQNLLNEFKEKDSKLRNLQQYQAQLQQMEANFNQQLEQLPKETEIPSLVEDINVTGVSSGLKFKNIRLEPEVKQEFFIEQ
PISIDATGDYHSFGTFVSSVAALPRIVTLHDFTITGTASQDKKSDVPVIDYTIKAKTYRYIGADEQKAQKTVNQTNPAAP
STPQQGGTPQ

Nucleotide


Download         Length: 753 bp        

>NTDB_id=875749 RG306_RS01665 WP_004825387.1 361641..362393(+) (comO) [Acinetobacter bereziniae strain UCO-553]
ATGAGTCGTGAAGATTTTGAGCAATTAGATTCATCAGTAAACGATGCTCCAAAAAAGAATAAAATGACAGTTGAGAAATT
TTTTCAACAGTTCAATACTTTGGATATGAACAACTATGGTAGTTGGCCGCTATCGGTAAAAATTACTTGTTGGATATTTT
TGTTCTTTGTGGTTTGTGCAATTGGCTATTTTCTTGCGGTGAGACCGAAGCTGGATGCAATTGATCAGGCACGCACAGTT
GAACAGAATCTACTGAATGAATTTAAAGAAAAAGACTCTAAGTTACGAAATTTGCAACAATATCAAGCCCAGTTACAACA
AATGGAAGCCAATTTCAATCAACAATTGGAACAGTTGCCAAAAGAAACTGAAATTCCGAGTTTGGTTGAAGATATTAACG
TGACTGGGGTGAGTTCAGGGCTAAAATTTAAAAATATCAGACTTGAACCTGAAGTGAAGCAAGAGTTCTTTATTGAACAA
CCTATTTCCATTGATGCGACAGGGGATTATCACTCATTTGGTACTTTCGTCAGTAGCGTCGCTGCTTTACCACGTATTGT
TACTTTGCATGATTTCACCATTACAGGAACTGCCAGTCAGGATAAAAAATCTGATGTTCCTGTGATTGACTATACCATTA
AGGCAAAAACCTATCGCTATATTGGTGCTGATGAACAGAAAGCTCAAAAAACTGTGAATCAGACAAATCCAGCTGCACCA
TCGACACCACAGCAAGGAGGGACACCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8TTL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

69.512

98.4

0.684
  pilO Acinetobacter baumannii D1279779

71.179

91.6

0.652