Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   RG306_RS01675 Genome accession   NZ_CP133666
Coordinates   362941..365112 (+) Length   723 a.a.
NCBI ID   WP_005034341.1    Uniprot ID   N9EF64
Organism   Acinetobacter bereziniae strain UCO-553     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 357941..370112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG306_RS01655 (RG306_01655) comM 359945..361003 (+) 1059 WP_005034346.1 pilus assembly protein PilM Machinery gene
  RG306_RS01660 (RG306_01660) pilN 361003..361644 (+) 642 WP_004825390.1 PilN domain-containing protein Machinery gene
  RG306_RS01665 (RG306_01665) comO 361641..362393 (+) 753 WP_004825387.1 type 4a pilus biogenesis protein PilO Machinery gene
  RG306_RS01670 (RG306_01670) comL 362390..362920 (+) 531 WP_005034344.1 pilus assembly protein PilP Machinery gene
  RG306_RS01675 (RG306_01675) pilQ 362941..365112 (+) 2172 WP_005034341.1 type IV pilus secretin PilQ Machinery gene
  RG306_RS01680 (RG306_01680) aroK 365149..365691 (+) 543 WP_004825383.1 shikimate kinase AroK -
  RG306_RS01685 (RG306_01685) aroB 365728..366807 (+) 1080 WP_005034338.1 3-dehydroquinate synthase -
  RG306_RS01690 (RG306_01690) - 366826..367695 (+) 870 WP_005034336.1 hypothetical protein -

Sequence

Protein


Download         Length: 723 a.a.        Molecular weight: 78311.89 Da        Isoelectric Point: 7.2147

>NTDB_id=875751 RG306_RS01675 WP_005034341.1 362941..365112(+) (pilQ) [Acinetobacter bereziniae strain UCO-553]
MKKSLKNILIGDGKFMNSQLRQFTMATVAIAITQVAAAQTTMTNIVPMKIPGQGTEIRVMFNGLPPQPQAYQLDNPSRLV
LDFDNAKQNISQASIPVASEEASTVDVAADDQRSRLTVNLKNSGAFTTRVEGNTFILKINNANQAPSLPSYVSPTVNKQN
QGIADIGFQRGNAGEGQVIVSLSGANTPVDVQQQGSKVVIRTLGNKIPTHLLRRLNVNDFATPVSSVDAYNEGSNGVITI
QSSGSYEYMAFQAENKLTVSLKRPAENKVARPSASQSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLR
LKDVPWDQALDIILKTKNLDKRRNGSVIWIAPVTELIKAEEDEAKALAQSVKLAPIQTEYINLNYAKVADVLKLLEDSRN
PKGAQANGTSNTDSLALESLLSSRGSAVADIRTNTLIINDTANNIDKVRKMVDLLDVSVKQVMVEARIVRATTDFTKEMG
VKWGILSQGITKNNDLLVGGSDQTLWDLKTPDDEGKYTITRPDNLNVDLGVTTAGASKIAFGLISLSDFMLDLELSALQS
DGYGEVISTPKVMTADKQKAKVASGQQIPYQTVSTAGGTATATTSFKDALLSLDVTPSITPDGKVQMQLNITSDSRGGIA
PNGEVILNKNEINTNVLVDNGETVVLGGIFEQENTTSQTKVPFLGDIPYLGRLFRKDAKTENKRELLIFVTPRIVNDSRT
RNH

Nucleotide


Download         Length: 2172 bp        

>NTDB_id=875751 RG306_RS01675 WP_005034341.1 362941..365112(+) (pilQ) [Acinetobacter bereziniae strain UCO-553]
ATGAAAAAGAGTTTGAAAAATATCTTGATTGGGGATGGTAAGTTTATGAATAGTCAACTTCGTCAATTTACTATGGCGAC
GGTCGCAATTGCAATTACACAAGTTGCAGCAGCACAAACCACGATGACCAACATTGTTCCGATGAAAATACCGGGGCAGG
GTACAGAAATTCGTGTCATGTTTAATGGTCTTCCTCCGCAGCCACAAGCCTATCAATTGGATAATCCATCTCGTTTAGTA
TTGGACTTTGACAATGCTAAACAAAATATTAGCCAAGCATCTATTCCCGTAGCGAGTGAGGAAGCTTCCACAGTCGATGT
CGCTGCAGATGATCAACGTTCTCGGTTAACAGTAAATTTAAAAAATAGTGGCGCTTTTACAACACGTGTAGAAGGTAATA
CTTTTATTTTAAAAATTAATAATGCCAATCAAGCACCGAGCTTACCGAGTTATGTATCTCCGACGGTCAATAAGCAAAAT
CAAGGGATTGCTGATATTGGCTTCCAACGTGGAAATGCTGGCGAAGGGCAAGTAATTGTGAGCCTTTCGGGTGCAAATAC
CCCAGTGGATGTTCAGCAGCAAGGCAGTAAGGTCGTTATTCGAACATTGGGAAATAAAATTCCTACACATTTATTGCGTC
GTTTAAATGTCAATGATTTTGCAACACCAGTTTCTAGCGTAGACGCTTATAACGAGGGTTCCAATGGTGTCATCACCATT
CAATCATCGGGTAGCTATGAATATATGGCTTTCCAAGCTGAAAATAAATTAACTGTCAGCTTGAAACGACCTGCAGAAAA
TAAGGTGGCTCGCCCAAGTGCAAGCCAATCTTATACAGGTAAGAAAATTTCTTTAGATTTCCAAGATATTGAAGTCCGTC
GAGTATTACAGTTGTTGGCTGACTTTACCGGAATCAATATGGTGGCTGCTGATTCGGTACAAGGCAATATTACCTTGCGT
CTGAAAGATGTGCCTTGGGATCAAGCTTTAGACATTATCCTAAAAACAAAGAATTTGGATAAACGCCGTAATGGGAGTGT
GATTTGGATTGCGCCTGTAACTGAGTTAATTAAAGCGGAAGAGGATGAAGCAAAAGCATTAGCGCAAAGTGTAAAATTAG
CACCTATTCAAACAGAATATATAAATCTAAATTATGCAAAAGTTGCTGATGTCTTGAAATTATTAGAGGACTCTCGAAAT
CCTAAAGGTGCTCAAGCGAATGGGACAAGCAATACAGATTCTTTGGCCTTGGAAAGTTTATTGAGTTCAAGAGGCAGTGC
AGTAGCTGATATACGAACAAATACACTTATTATTAATGATACTGCGAATAATATTGATAAAGTTCGTAAAATGGTTGATC
TCCTTGATGTTTCAGTAAAACAAGTAATGGTTGAAGCACGAATTGTACGTGCTACAACGGATTTCACCAAAGAGATGGGG
GTGAAATGGGGTATTTTATCTCAAGGCATCACCAAAAATAATGACCTTTTGGTGGGGGGGAGCGACCAAACGCTTTGGGA
TTTAAAAACACCTGATGATGAAGGAAAATATACCATTACACGACCTGATAACCTGAATGTAGACCTTGGGGTTACAACAG
CTGGAGCAAGTAAAATTGCTTTTGGTTTAATCAGTTTGTCTGATTTTATGTTGGACTTGGAGTTATCTGCTTTGCAATCT
GATGGGTATGGTGAGGTGATTTCAACACCAAAAGTCATGACGGCGGATAAACAGAAGGCTAAAGTCGCATCTGGTCAACA
AATTCCTTATCAAACAGTATCAACAGCTGGTGGTACAGCAACAGCAACCACATCATTTAAAGATGCGTTATTAAGTCTGG
ACGTGACGCCAAGTATTACCCCTGATGGTAAAGTACAAATGCAGCTTAATATTACCAGTGATTCTCGAGGTGGTATTGCC
CCGAATGGTGAGGTCATTCTGAATAAGAATGAAATCAATACCAATGTCTTGGTGGATAATGGTGAAACTGTAGTTTTGGG
TGGGATTTTTGAGCAAGAAAATACCACGAGCCAAACTAAAGTGCCATTCTTAGGAGATATTCCTTATTTAGGGCGTTTAT
TCCGAAAAGATGCCAAAACAGAGAACAAACGTGAACTGCTAATCTTTGTGACACCAAGAATTGTTAATGACAGTCGTACG
AGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(557-715)

Bacterial type II/III secretion system short domain (Secretin_N)

(379-461)

AMIN domain (AMIN)

(55-137)

Secretin and TonB N terminus short domain (STN)

(310-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9EF64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

72.727

100

0.73
  pilQ Acinetobacter baumannii strain A118

72.727

100

0.73
  comQ Acinetobacter baylyi ADP1

70.225

98.479

0.692
  pilQ Pseudomonas aeruginosa PAK

39.048

100

0.397