Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WD728_RS13525 Genome accession   NZ_CP149810
Coordinates   2768305..2768934 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain EP91B     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2763305..2773934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WD728_RS13510 (WD728_13510) helD 2763547..2765601 (-) 2055 WP_001295354.1 DNA helicase IV -
  WD728_RS13515 (WD728_13515) yccF 2765724..2766170 (+) 447 WP_001261235.1 YccF domain-containing protein -
  WD728_RS13520 (WD728_13520) yccS 2766180..2768342 (+) 2163 WP_000875061.1 YccS family putative transporter -
  WD728_RS13525 (WD728_13525) sxy/tfoX 2768305..2768934 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WD728_RS13530 (WD728_13530) sulA 2769153..2769662 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  WD728_RS13535 (WD728_13535) ompA 2770019..2771059 (+) 1041 WP_000750416.1 porin OmpA -
  WD728_RS13540 (WD728_13540) matP 2771135..2771587 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  WD728_RS13545 (WD728_13545) ycbZ 2771773..2773533 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=875751 WD728_RS13525 WP_000839153.1 2768305..2768934(-) (sxy/tfoX) [Escherichia coli strain EP91B]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=875751 WD728_RS13525 WP_000839153.1 2768305..2768934(-) (sxy/tfoX) [Escherichia coli strain EP91B]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1