Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RFN81_RS14575 Genome accession   NZ_CP133656
Coordinates   3168134..3168679 (+) Length   181 a.a.
NCBI ID   WP_264496512.1    Uniprot ID   -
Organism   Pectobacterium cacticida strain CFBP3628     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3163134..3173679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN81_RS14565 (RFN81_14565) - 3164493..3164912 (-) 420 WP_264496510.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RFN81_RS14570 (RFN81_14570) uvrA 3164978..3167812 (-) 2835 WP_264496511.1 excinuclease ABC subunit UvrA -
  RFN81_RS14575 (RFN81_14575) ssb 3168134..3168679 (+) 546 WP_264496512.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RFN81_RS14580 (RFN81_14580) - 3168782..3168832 (+) 51 Protein_2828 hypothetical protein -
  RFN81_RS14585 (RFN81_14585) rarD 3169178..3170068 (-) 891 WP_264496513.1 EamA family transporter RarD -
  RFN81_RS14590 (RFN81_14590) - 3170065..3170703 (-) 639 WP_264496514.1 isochorismatase family cysteine hydrolase -
  RFN81_RS14595 (RFN81_14595) - 3170696..3172045 (-) 1350 WP_264496515.1 solute carrier family 23 protein -
  RFN81_RS14600 (RFN81_14600) - 3172244..3172717 (+) 474 WP_264496516.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19269.24 Da        Isoelectric Point: 5.2358

>NTDB_id=875628 RFN81_RS14575 WP_264496512.1 3168134..3168679(+) (ssb) [Pectobacterium cacticida strain CFBP3628]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWTDQSGADRYTTEVVVNVGGTMQMLGGRQSGGAPAGGGQPGGWGQPQQPQGGNQFSGGAQAQQRPAQNAAPT
PNNAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=875628 RFN81_RS14575 WP_264496512.1 3168134..3168679(+) (ssb) [Pectobacterium cacticida strain CFBP3628]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGGCAAGACCCGGAAGTCCGCTACATGCCAAACGG
CGGTGCAGTTGCCAACATCACGCTGGCGACATCGGAAAGCTGGCGCGACAAGCAAACCGGTGAACAAAAAGAGAAGACCG
AATGGCACCGTGTGGTGCTATTCGGCAAATTGGCGGAAGTGGCGGGCGAATACCTGCGCAAGGGTTCTCAAGTTTATATT
GAAGGTTCATTACAAACACGTAAGTGGACCGATCAGTCAGGCGCCGATCGCTACACCACCGAAGTCGTTGTTAACGTCGG
CGGTACAATGCAGATGTTAGGCGGTCGCCAGAGTGGCGGTGCGCCCGCAGGCGGCGGGCAACCAGGCGGCTGGGGCCAGC
CGCAGCAACCACAGGGTGGCAACCAGTTCAGCGGCGGGGCGCAGGCGCAGCAACGTCCCGCGCAAAACGCCGCCCCTACA
CCCAATAACGCCCCAGCGCAAAGCAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.872

100

0.757
  ssb Glaesserella parasuis strain SC1401

57.368

100

0.602
  ssb Neisseria meningitidis MC58

46.486

100

0.475
  ssb Neisseria gonorrhoeae MS11

46.486

100

0.475