Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RFN60_RS20865 Genome accession   NZ_CP133653
Coordinates   4042246..4042764 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain CP38     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4037246..4047764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS20835 (RFN60_20835) yyaJ 4037750..4039105 (+) 1356 WP_069703959.1 MFS transporter -
  RFN60_RS20840 (RFN60_20840) maa 4039139..4039693 (-) 555 WP_032722825.1 sugar O-acetyltransferase -
  RFN60_RS20845 (RFN60_20845) yyaH 4039711..4040091 (-) 381 WP_003244460.1 VOC family protein -
  RFN60_RS20850 (RFN60_20850) ccpB 4040147..4041082 (-) 936 WP_048654830.1 transcriptional regulator CcpB -
  RFN60_RS20855 (RFN60_20855) xth 4041141..4041899 (-) 759 WP_029726087.1 exodeoxyribonuclease III -
  RFN60_RS20860 (RFN60_20860) rpsR 4041963..4042202 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  RFN60_RS20865 (RFN60_20865) ssbA 4042246..4042764 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  RFN60_RS20870 (RFN60_20870) rpsF 4042805..4043092 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  RFN60_RS20875 (RFN60_20875) ychF 4043203..4044303 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  RFN60_RS20880 (RFN60_20880) yyaE 4044430..4046433 (-) 2004 WP_309520522.1 molybdopterin-dependent oxidoreductase -
  RFN60_RS20885 (RFN60_20885) yyzM 4046484..4046690 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=875611 RFN60_RS20865 WP_003219228.1 4042246..4042764(-) (ssbA) [Bacillus subtilis strain CP38]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=875611 RFN60_RS20865 WP_003219228.1 4042246..4042764(-) (ssbA) [Bacillus subtilis strain CP38]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378