Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RFF16_RS06605 Genome accession   NZ_CP133642
Coordinates   1441591..1442091 (+) Length   166 a.a.
NCBI ID   WP_010907419.1    Uniprot ID   -
Organism   Pasteurella multocida strain Past3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1436591..1447091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFF16_RS06590 (RFF16_06585) rlmB 1437134..1437871 (+) 738 WP_005725044.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RFF16_RS06595 (RFF16_06590) sodC 1437957..1438517 (-) 561 WP_010907421.1 superoxide dismutase family protein -
  RFF16_RS06600 (RFF16_06595) uvrA 1438588..1441419 (-) 2832 WP_010907420.1 excinuclease ABC subunit UvrA -
  RFF16_RS06605 (RFF16_06600) ssb 1441591..1442091 (+) 501 WP_010907419.1 single-stranded DNA-binding protein Machinery gene
  RFF16_RS06610 (RFF16_06605) - 1442241..1443521 (+) 1281 WP_016533798.1 site-specific integrase -
  RFF16_RS06615 (RFF16_06610) - 1443508..1445028 (+) 1521 WP_010907418.1 site-specific integrase -
  RFF16_RS06620 (RFF16_06615) - 1445031..1447067 (+) 2037 WP_010907417.1 integrase -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18687.70 Da        Isoelectric Point: 5.3353

>NTDB_id=875445 RFF16_RS06605 WP_010907419.1 1441591..1442091(+) (ssb) [Pasteurella multocida strain Past3]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGSYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=875445 RFF16_RS06605 WP_010907419.1 1441591..1442091(+) (ssb) [Pasteurella multocida strain Past3]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAGGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACTACCGAAATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTAGCTACGGTGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

68.681

100

0.753
  ssb Vibrio cholerae strain A1552

54.144

100

0.59
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47