Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   V8N34_RS00365 Genome accession   NZ_CP149804
Coordinates   62029..62619 (+) Length   196 a.a.
NCBI ID   WP_024403269.1    Uniprot ID   -
Organism   Streptococcus suis strain YA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 57029..67619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS00355 (V8N34_00355) - 58412..59935 (+) 1524 WP_044763875.1 quinol oxidase -
  V8N34_RS00360 (V8N34_00360) hexB 60053..61990 (+) 1938 WP_172060540.1 DNA mismatch repair endonuclease MutL Machinery gene
  V8N34_RS00365 (V8N34_00365) ruvA 62029..62619 (+) 591 WP_024403269.1 Holliday junction branch migration protein RuvA Machinery gene
  V8N34_RS00370 (V8N34_00370) - 62873..63433 (+) 561 WP_172041687.1 DNA-3-methyladenine glycosylase I -
  V8N34_RS00375 (V8N34_00375) - 63507..63917 (+) 411 WP_024403267.1 helix-turn-helix transcriptional regulator -
  V8N34_RS00380 (V8N34_00380) - 63890..64555 (+) 666 WP_024403266.1 type II CAAX endopeptidase family protein -
  V8N34_RS00385 (V8N34_00385) cinA 64699..65880 (+) 1182 WP_172060539.1 competence/damage-inducible protein A Machinery gene
  V8N34_RS00390 (V8N34_00390) recA 65932..67083 (+) 1152 WP_044692568.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21748.11 Da        Isoelectric Point: 5.3356

>NTDB_id=875441 V8N34_RS00365 WP_024403269.1 62029..62619(+) (ruvA) [Streptococcus suis strain YA]
MYDYIKGILTKITAKYIVVETHGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALEEAMEAME
ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=875441 V8N34_RS00365 WP_024403269.1 62029..62619(+) (ruvA) [Streptococcus suis strain YA]
ATGTACGACTATATTAAAGGAATTTTAACAAAAATAACTGCAAAATACATTGTGGTAGAAACGCATGGAGTAGGCTATAT
CTTGCAAGTTGCTAACCCCTACGCCTACTCTGGACAAGTCCAGCAAGAAGTGACGGTCTATACTCATCAAGTGATTCGAG
AAGATGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACAGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCCATTGAGCAGAAGAACATTAC
CTACCTGACCAAGTTTCCAAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACTTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACAAGTAGCACCATCCAGTGAAAATATCGCCCTCGAAGAAGCCATGGAAGCCATGGAA
GCTCTTGGCTACCGACCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACCAACGACACCGCAGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

76.142

100

0.765
  ruvA Streptococcus pneumoniae D39

76.142

100

0.765
  ruvA Streptococcus pneumoniae TIGR4

76.142

100

0.765
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408