Detailed information    

insolico Bioinformatically predicted

Overview


Name   rec2   Type   Machinery gene
Locus tag   RFF16_RS04470 Genome accession   NZ_CP133642
Coordinates   978079..980472 (-) Length   797 a.a.
NCBI ID   WP_310843163.1    Uniprot ID   -
Organism   Pasteurella multocida strain Past3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 925223..982800 978079..980472 within 0


Gene organization within MGE regions


Location: 925223..982800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFF16_RS04150 (RFF16_04145) gyrA 925223..927904 (+) 2682 WP_250249422.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -
  RFF16_RS04155 (RFF16_04150) - 927982..928350 (+) 369 WP_150332084.1 SirB2 family protein -
  RFF16_RS04160 (RFF16_04155) - 928560..930326 (-) 1767 WP_076090515.1 TadE/TadG family type IV pilus assembly protein -
  RFF16_RS04165 (RFF16_04160) tadF 930346..930909 (-) 564 WP_010906877.1 tight adherence pilus pseudopilin TadF -
  RFF16_RS04170 (RFF16_04165) - 930938..931525 (-) 588 WP_010906878.1 TadE/TadG family type IV pilus assembly protein -
  RFF16_RS04175 (RFF16_04170) - 931541..932314 (-) 774 WP_096743084.1 tetratricopeptide repeat protein -
  RFF16_RS04180 (RFF16_04175) - 932304..933158 (-) 855 WP_010906880.1 type II secretion system F family protein -
  RFF16_RS04185 (RFF16_04180) - 933155..934039 (-) 885 WP_041422604.1 type II secretion system F family protein -
  RFF16_RS04190 (RFF16_04185) - 934040..935317 (-) 1278 WP_010906882.1 CpaF family protein -
  RFF16_RS04195 (RFF16_04190) - 935337..936458 (-) 1122 WP_010906883.1 CpaE family protein -
  RFF16_RS04200 (RFF16_04195) - 936475..936978 (-) 504 WP_010906884.1 protein RcpB -
  RFF16_RS04205 (RFF16_04200) - 936975..938387 (-) 1413 WP_250249416.1 type II and III secretion system protein family protein -
  RFF16_RS04210 (RFF16_04205) - 938384..939196 (-) 813 WP_250249414.1 SAF domain-containing protein -
  RFF16_RS04215 (RFF16_04210) - 939239..939670 (-) 432 WP_310843173.1 prepilin peptidase -
  RFF16_RS04220 (RFF16_04215) - 939696..939878 (-) 183 WP_250249411.1 Flp family type IVb pilin -
  RFF16_RS04225 (RFF16_04220) - 939982..940209 (-) 228 WP_250249408.1 Flp family type IVb pilin -
  RFF16_RS04235 (RFF16_04230) - 941375..942397 (-) 1023 WP_323996881.1 site-specific integrase -
  RFF16_RS04240 (RFF16_04235) - 942400..942852 (-) 453 WP_323996882.1 hypothetical protein -
  RFF16_RS04245 (RFF16_04240) - 942852..943427 (-) 576 WP_005725712.1 phage repressor protein CI -
  RFF16_RS04250 (RFF16_04245) - 943552..943764 (+) 213 WP_005725956.1 hypothetical protein -
  RFF16_RS04255 (RFF16_04250) - 943836..944078 (-) 243 WP_323996883.1 hypothetical protein -
  RFF16_RS04260 (RFF16_04255) - 944157..944339 (+) 183 WP_323996884.1 hypothetical protein -
  RFF16_RS04265 (RFF16_04260) - 944332..944667 (+) 336 WP_323996885.1 hypothetical protein -
  RFF16_RS04270 (RFF16_04265) - 944648..944857 (+) 210 WP_323996886.1 hypothetical protein -
  RFF16_RS04275 (RFF16_04270) - 944873..945124 (+) 252 WP_250047254.1 hypothetical protein -
  RFF16_RS04280 (RFF16_04275) - 945130..945399 (+) 270 WP_005725397.1 hypothetical protein -
  RFF16_RS04285 (RFF16_04280) - 945429..947819 (+) 2391 WP_323996887.1 replication endonuclease -
  RFF16_RS04290 (RFF16_04285) - 947841..948092 (+) 252 WP_323996888.1 hypothetical protein -
  RFF16_RS04295 (RFF16_04290) - 948151..948402 (+) 252 WP_323996889.1 hypothetical protein -
  RFF16_RS04300 (RFF16_04295) - 948374..948916 (+) 543 WP_272465258.1 phage N-6-adenine-methyltransferase -
  RFF16_RS04305 (RFF16_04300) - 949008..949283 (-) 276 WP_322911282.1 ogr/Delta-like zinc finger family protein -
  RFF16_RS04310 (RFF16_04305) - 949359..950390 (-) 1032 WP_271343337.1 phage portal protein -
  RFF16_RS04315 (RFF16_04310) - 950395..952200 (-) 1806 WP_323996890.1 terminase ATPase subunit family protein -
  RFF16_RS04320 (RFF16_04315) - 952405..953286 (+) 882 WP_323996891.1 GPO family capsid scaffolding protein -
  RFF16_RS04325 (RFF16_04320) - 953290..954318 (+) 1029 WP_323996892.1 phage major capsid protein, P2 family -
  RFF16_RS04330 (RFF16_04325) - 954325..955197 (+) 873 WP_323996893.1 terminase endonuclease subunit -
  RFF16_RS04335 (RFF16_04330) - 955170..955622 (+) 453 WP_323996894.1 head completion/stabilization protein -
  RFF16_RS04340 (RFF16_04335) - 955619..956152 (+) 534 WP_323996895.1 phage tail protein -
  RFF16_RS04345 (RFF16_04340) - 956149..956838 (+) 690 WP_323996896.1 hypothetical protein -
  RFF16_RS04350 (RFF16_04345) - 956857..957987 (+) 1131 WP_078801982.1 DUF2586 domain-containing protein -
  RFF16_RS04355 (RFF16_04350) - 957992..958444 (+) 453 WP_078801983.1 DUF2597 family protein -
  RFF16_RS04360 (RFF16_04355) - 958527..958739 (+) 213 WP_016533245.1 phage holin -
  RFF16_RS04365 (RFF16_04360) - 958726..959277 (+) 552 WP_078801984.1 lysozyme -
  RFF16_RS04370 (RFF16_04365) - 959274..959660 (+) 387 WP_323996965.1 hypothetical protein -
  RFF16_RS10980 lysC 959566..959787 (+) 222 WP_410522784.1 Rz1-like lysis system protein LysC -
  RFF16_RS04375 (RFF16_04370) - 959794..960102 (+) 309 WP_169326165.1 putative phage tail assembly chaperone -
  RFF16_RS10985 - 960159..960281 (+) 123 WP_016533247.1 DUF6890 family protein -
  RFF16_RS04380 (RFF16_04375) - 960295..962418 (+) 2124 WP_323996897.1 phage tail tape measure protein -
  RFF16_RS04385 (RFF16_04380) - 962422..962760 (+) 339 WP_005725175.1 DUF2590 family protein -
  RFF16_RS04390 (RFF16_04385) - 962753..963919 (+) 1167 WP_323996898.1 baseplate J/gp47 family protein -
  RFF16_RS04395 (RFF16_04390) - 963916..964440 (+) 525 WP_323996899.1 phage tail protein -
  RFF16_RS04400 (RFF16_04395) - 964459..966777 (+) 2319 WP_323996900.1 phage tail protein -
  RFF16_RS04405 (RFF16_04400) - 966788..967390 (+) 603 WP_323996901.1 hypothetical protein -
  RFF16_RS04410 (RFF16_04405) - 967366..967641 (+) 276 WP_323996902.1 DNA helicase UvrD -
  RFF16_RS04415 (RFF16_04410) - 967657..968421 (+) 765 WP_323996903.1 hypothetical protein -
  RFF16_RS04420 (RFF16_04415) - 968408..968983 (+) 576 WP_323996906.1 hypothetical protein -
  RFF16_RS04425 (RFF16_04420) - 968983..970584 (+) 1602 WP_323996907.1 hypothetical protein -
  RFF16_RS04440 (RFF16_04435) pgsA 971785..972342 (-) 558 WP_005751628.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RFF16_RS04445 (RFF16_04440) uvrC 972438..974264 (-) 1827 WP_284346537.1 excinuclease ABC subunit UvrC -
  RFF16_RS04450 (RFF16_04445) kdsB 974298..975074 (-) 777 WP_096743089.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RFF16_RS04455 (RFF16_04450) - 975076..975258 (-) 183 WP_096743090.1 Trm112 family protein -
  RFF16_RS04460 (RFF16_04455) lpxK 975270..976247 (-) 978 WP_083002776.1 tetraacyldisaccharide 4'-kinase -
  RFF16_RS04465 (RFF16_04460) msbA 976278..978026 (-) 1749 WP_279896480.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  RFF16_RS04470 (RFF16_04465) rec2 978079..980472 (-) 2394 WP_310843163.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RFF16_RS04475 (RFF16_04470) dksA 980770..981207 (+) 438 WP_010906892.1 RNA polymerase-binding protein DksA -
  RFF16_RS04480 (RFF16_04475) pcnB 981295..982800 (+) 1506 WP_104228071.1 polynucleotide adenylyltransferase PcnB -

Sequence


Protein


Download         Length: 797 a.a.        Molecular weight: 91057.39 Da        Isoelectric Point: 9.8715

>NTDB_id=875438 RFF16_RS04470 WP_310843163.1 978079..980472(-) (rec2) [Pasteurella multocida strain Past3]
MKNALLSISVVTVLSACSLLWLPEHVLLHWHMTLLVFVLLLVSIIICVLCGKNHWISPLIFVLSSVGILGYIHDQARQTL
LQADLIAQLPRKIETEFKIIEVLQQKNYQTFVVSAQLIPQQAKQKMFLQWHAQEKAQIGEVWKGELRLRPISSRLNMGGF
DKQQWYFAKGITAYATVKSAVKISEQLSWREKWLQETIKQTSTLDYQGLLIALAFGERAWLPTDIWQTYQKTSTAHVIAI
SGLHIGLAMGIGYFFIRFIQFVLPLKWVTPTLPIFVGLLFAWFYAELAGFTIPTTRAFFALAVVTLLRLWRRFYSVWQLL
LLVVALLLLANPLIVLSSSFWLSVSAVSALIIWYQIFPFSLLHWRGKSLTEGPWRKCCWFFSLLHLQLGLLWLFTPVQLL
LFQGISLTSFMANVLVVPIYSVILVPLILFAVITQGAFSSWFLANTVARQVTILLTPLQSHWVVFSQREILCLIAILALS
FIILIWYLYDFKKESLKCYIKVPRFFHLNQMRQLNPSLKWKIYSLATVISLYCFLQVLYKEISQPLWRLDTLDVGQGLAN
LIVVNGKGVLYDTGASWAGGSMAELEIIPYLQREGIALEQVILSHDDNDHVGGAETILKHYPQAKLMTASAQHYGKTDRT
FCEAGKTWTWQHLTFKALSPTKTVKRAKNTDSCVLLISDGSYHILLTGDADIAAEKQFVKQLSQLDVLQVGHHGSKTSTG
YELLYQTRPKIALISSGRWNPWQFPHVQVVQRLKRYQTTVYNTGELGQISLLFHAKHIEIQTARTDFSPWYRRLIGL

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=875438 RFF16_RS04470 WP_310843163.1 978079..980472(-) (rec2) [Pasteurella multocida strain Past3]
ATGAAAAACGCTCTTTTGTCAATATCTGTTGTGACTGTATTAAGTGCATGTTCGTTACTTTGGCTACCTGAACATGTCTT
GCTCCATTGGCATATGACATTGTTAGTCTTCGTATTATTGCTTGTTAGCATAATCATTTGTGTTCTTTGTGGCAAAAATC
ACTGGATTTCGCCTTTGATCTTTGTACTGAGTTCAGTAGGCATTTTAGGCTATATCCACGATCAAGCTCGTCAGACATTA
TTGCAAGCGGACTTGATTGCTCAACTGCCTCGAAAGATAGAGACTGAATTTAAAATCATTGAAGTATTACAACAAAAAAA
CTATCAAACTTTTGTAGTTTCGGCACAATTGATACCGCAACAGGCAAAACAAAAAATGTTTCTTCAATGGCACGCGCAAG
AAAAAGCACAGATTGGCGAAGTTTGGAAAGGAGAGCTGCGGCTCAGACCGATTTCATCAAGGCTCAATATGGGCGGTTTT
GATAAACAGCAATGGTATTTCGCCAAAGGCATTACCGCTTATGCGACGGTAAAAAGTGCGGTCAAAATAAGTGAACAGTT
ATCTTGGCGAGAAAAATGGTTACAAGAAACGATAAAACAGACCTCAACATTAGACTATCAAGGACTGTTAATCGCGTTGG
CTTTTGGTGAACGGGCATGGTTACCCACAGATATTTGGCAAACTTATCAAAAAACTAGCACAGCACATGTGATTGCCATA
TCGGGTTTACATATTGGACTTGCGATGGGAATAGGTTATTTTTTTATCCGTTTCATTCAGTTTGTGTTGCCATTAAAGTG
GGTGACACCAACCTTACCAATATTCGTAGGGCTTCTTTTTGCCTGGTTTTATGCGGAGCTAGCGGGTTTTACTATACCGA
CGACAAGAGCATTTTTCGCTCTCGCCGTTGTCACTTTGCTACGACTCTGGCGGCGATTTTATAGTGTTTGGCAACTTCTT
TTATTGGTAGTTGCTTTGTTATTGTTAGCAAATCCCTTAATTGTTTTATCCAGTAGCTTTTGGCTGTCAGTGAGCGCAGT
CAGTGCTCTGATTATTTGGTACCAAATATTCCCCTTCTCGTTATTACACTGGCGAGGAAAAAGTCTTACAGAGGGTCCTT
GGCGCAAATGTTGTTGGTTCTTTAGTCTTCTTCATTTACAACTTGGCTTATTATGGCTTTTTACCCCTGTTCAATTATTG
CTTTTTCAGGGAATATCTTTAACAAGCTTTATGGCGAATGTGCTTGTCGTCCCTATTTATAGTGTGATTTTAGTACCATT
GATTTTATTTGCGGTGATCACACAAGGGGCTTTTTCCTCTTGGTTTCTCGCAAATACTGTCGCGAGACAGGTCACGATAC
TTTTAACGCCATTACAATCCCATTGGGTTGTCTTCTCACAGCGGGAAATACTCTGTCTGATCGCGATCTTAGCTTTAAGC
TTTATTATATTGATTTGGTATCTGTATGATTTTAAAAAAGAATCACTTAAGTGCTATATCAAAGTGCCGCGTTTTTTTCA
TCTTAATCAAATGCGGCAGTTAAATCCGTCTTTAAAATGGAAAATTTATTCCCTTGCTACAGTCATCAGTCTTTATTGTT
TTTTACAGGTACTTTATAAGGAGATATCTCAACCCCTTTGGCGTTTAGATACGCTCGATGTGGGGCAGGGGTTAGCTAAC
CTGATTGTCGTGAATGGGAAAGGGGTTTTGTATGATACGGGGGCATCTTGGGCGGGAGGAAGTATGGCAGAACTAGAAAT
CATCCCTTATTTACAAAGAGAGGGGATTGCGTTAGAACAGGTGATTTTAAGTCATGATGATAATGATCATGTTGGGGGCG
CGGAAACAATTCTAAAACATTACCCTCAAGCGAAGCTGATGACAGCGTCTGCTCAACATTACGGAAAAACTGACCGCACT
TTTTGTGAAGCCGGCAAAACTTGGACTTGGCAACACTTAACATTCAAAGCCCTTTCACCGACTAAAACAGTGAAGCGAGC
GAAAAATACGGACTCTTGTGTGTTACTGATCTCAGATGGTTCTTATCATATCCTTTTAACGGGCGATGCAGATATTGCTG
CGGAAAAGCAGTTCGTGAAGCAGTTAAGTCAACTTGATGTATTACAAGTTGGACATCATGGCAGTAAAACCTCAACTGGA
TATGAACTGCTTTATCAAACACGACCAAAAATCGCGCTGATTTCAAGTGGTCGTTGGAATCCATGGCAATTTCCACATGT
TCAGGTTGTACAACGACTTAAACGTTATCAAACGACAGTATATAACACTGGCGAGTTAGGACAAATTAGCTTACTTTTTC
ATGCAAAACACATCGAAATTCAAACCGCAAGAACGGATTTTTCGCCTTGGTATCGTAGATTAATTGGCTTGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

51.128

100

0.512