Detailed information NTG0875438

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: V8N34_RS00335
• Genome accession: NZ_CP149804
• Coordinates: 53942..54943 (+)
• Length: 333 a.a.
• NCBI ID: WP_024377694.1
• Uniprot ID: -
• Organism: Streptococcus suis strain YA
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 48942..59943

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V8N34_RS00305 (V8N34_00305)	-	48992..49570 (+)	579	WP_184493685.1	CPBP family intramembrane glutamic endopeptidase	-
V8N34_RS00310 (V8N34_00310)	-	49585..50013 (+)	429	WP_184493687.1	Msa family membrane protein	-
V8N34_RS00315 (V8N34_00315)	-	50006..50878 (+)	873	WP_029184817.1	ABC transporter ATP-binding protein	-
V8N34_RS00320 (V8N34_00320)	-	50884..51654 (+)	771	WP_184493689.1	hypothetical protein	-
V8N34_RS00325 (V8N34_00325)	-	51657..53372 (+)	1716	WP_184493691.1	ABC transporter ATP-binding protein	-
V8N34_RS00330 (V8N34_00330)	-	53474..53647 (+)	174	WP_014637276.1	hypothetical protein	-
V8N34_RS00335 (V8N34_00335)	ruvB	53942..54943 (+)	1002	WP_024377694.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
V8N34_RS00340 (V8N34_00340)	-	55011..55646 (+)	636	WP_172060542.1	HAD-IA family hydrolase	-
V8N34_RS00345 (V8N34_00345)	comR	55893..56792 (+)	900	WP_339059846.1	helix-turn-helix domain-containing protein	Regulator
V8N34_RS00350 (V8N34_00350)	-	57001..58215 (+)	1215	WP_029749649.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
V8N34_RS00355 (V8N34_00355)	-	58412..59935 (+)	1524	WP_044763875.1	quinol oxidase	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37627.15 Da
• Isoelectric Point: 4.4673

>NTDB_id=875438 V8N34_RS00335 WP_024377694.1 53942..54943(+) (ruvB) [Streptococcus suis strain YA]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDTITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEK

Nucleotide

• Length: 1002 bp

>NTDB_id=875438 V8N34_RS00335 WP_024377694.1 53942..54943(+) (ruvB) [Streptococcus suis strain YA]
ATGACAAATCGAATTTTAGATATGGAACAAATGCAGGACGAGGAGTATGTTGAGCGTACCCTGCGTCCACAGAAATTAAA
TGAGTACATCGGTCAGGACAAGGTTAAGGACCAGCTGAAAATCTTTATCGAGGCAGCCAAGCTCCGTGATGAAGCCTTGG
ACCATACCCTTCTGTTTGGACCTCCAGGTTTGGGGAAGACCACCATGGCTTTTGTCATTGCCAACGAACTAGGCGTCAAT
ATCAAGCAGACCAGTGGTCCTGTTATTGAAAAAGCAGGTGACTTGGTGGCCCTTCTCAACGACTTGGAGCCTGGCGACGT
CCTCTTTATCGATGAAATCCACCGTATGCCCATGGCGGTCGAGGAAATTCTCTACTCTGCTATGGAGGATTTCTACATCG
ACATCATGATTGGGGCTGGGGAAGCCAGTCGCTCCGTGCATTTGGAGTTGCCACCTTTTACCCTGATTGGAGCGACCACT
CGTGCGGGTATGCTGTCCAATCCCCTGCGGGCTCGTTTTGGTATTACCGGTCATATGGAGTATTATGAACTGGCTGATTT
GACGGAGATTGTCGAGCGGACAGCGGACATCTTTGACATGGAGATTACTCATGAAGCAGCGATCGAGCTGGCTCGTCGTT
CCCGTGGGACCCCTCGTATCGCCAACCGCCTGCTCAAGCGGGTGAGGGATTTCGCACAGATTATGGGCGATGGTCTGATT
GATGATACCATTACGGACAAGGCCTTGACTATGCTGGATGTGGACCGCGAGGGGCTGGACTACGTGGACCAAAAGATTCT
CCGTACCATGATTGAGATGTACGGTGGCGGTCCCGTCGGCCTCAACACCCTGTCGGTCAATATTGCCGAGGAGCGTGAGA
CGGTGGAGGACATGTACGAACCTTACCTGATTCAGCAGGGCTTCCTCATGCGGACGCGGACAGGGCGGGTTGCGACAGCC
AAGGCTTACGAGCACTTGGGTTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

• RuvB AAA lid domain (AAA_lid_4) (182-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.332	99.399	0.898
ruvB	Streptococcus pneumoniae R6	90.03	99.399	0.895
ruvB	Streptococcus pneumoniae D39	90.03	99.399	0.895
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.589	97.898	0.574
ruvB	Helicobacter pylori 26695	51.064	98.799	0.505
ruvB	Synechocystis sp. PCC 6803	50.479	93.994	0.474