Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RFF20_RS06480 Genome accession   NZ_CP133639
Coordinates   1397638..1398138 (+) Length   166 a.a.
NCBI ID   WP_083004547.1    Uniprot ID   -
Organism   Pasteurella multocida strain Past6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1392638..1403138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFF20_RS06465 (RFF20_06465) rlmB 1393181..1393918 (+) 738 WP_126417660.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RFF20_RS06470 (RFF20_06470) sodC 1394004..1394564 (-) 561 WP_005725042.1 superoxide dismutase family protein -
  RFF20_RS06475 (RFF20_06475) uvrA 1394635..1397466 (-) 2832 WP_324005571.1 excinuclease ABC subunit UvrA -
  RFF20_RS06480 (RFF20_06480) ssb 1397638..1398138 (+) 501 WP_083004547.1 single-stranded DNA-binding protein Machinery gene
  RFF20_RS06485 (RFF20_06485) folD 1398603..1399457 (-) 855 WP_115299861.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  RFF20_RS06500 (RFF20_06500) - 1400099..1400518 (+) 420 WP_083004526.1 DUF417 family protein -
  RFF20_RS06505 (RFF20_06505) lipA 1400584..1401546 (-) 963 WP_083004523.1 lipoyl synthase -
  RFF20_RS06510 (RFF20_06510) lipB 1401611..1402267 (-) 657 WP_096743306.1 lipoyl(octanoyl) transferase LipB -
  RFF20_RS06515 (RFF20_06515) ybeD 1402274..1402570 (-) 297 WP_083004519.1 DUF493 family protein YbeD -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18685.73 Da        Isoelectric Point: 5.3353

>NTDB_id=875424 RFF20_RS06480 WP_083004547.1 1397638..1398138(+) (ssb) [Pasteurella multocida strain Past6]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGVQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=875424 RFF20_RS06480 WP_083004547.1 1397638..1398138(+) (ssb) [Pasteurella multocida strain Past6]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGTGTCGCCACAAGCGAAAGTTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGCCGTCAAGCTGAAGTAGCCGGAGAATACCTCCGTAAAGGTTCAAAGGTGTATGTAGAAGGC
CGTCTAAAAACACGCAAATGGCAAGATCAAAACGGGCAAGATCGTTACACCACGGAAATTCAAGGCGACGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCCCCACAAACCGCTGCGCCACAATACAATGCCCCAACAG
GTGGCTACGGCGTACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCCCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.568

100

0.753
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

43.503

100

0.464
  ssb Neisseria gonorrhoeae MS11

43.503

100

0.464