Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RFF38_RS07575 Genome accession   NZ_CP133638
Coordinates   1589846..1590346 (+) Length   166 a.a.
NCBI ID   WP_083004547.1    Uniprot ID   -
Organism   Pasteurella multocida strain Past9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1584846..1595346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFF38_RS07560 (RFF38_07560) rlmB 1585389..1586126 (+) 738 WP_096743300.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RFF38_RS07565 (RFF38_07565) sodC 1586212..1586772 (-) 561 WP_005725042.1 superoxide dismutase family protein -
  RFF38_RS07570 (RFF38_07570) uvrA 1586843..1589674 (-) 2832 WP_249984485.1 excinuclease ABC subunit UvrA -
  RFF38_RS07575 (RFF38_07575) ssb 1589846..1590346 (+) 501 WP_083004547.1 single-stranded DNA-binding protein Machinery gene
  RFF38_RS07580 (RFF38_07580) - 1590496..1591776 (+) 1281 WP_249984484.1 site-specific integrase -
  RFF38_RS07585 (RFF38_07585) - 1591763..1593283 (+) 1521 WP_249984483.1 site-specific integrase -
  RFF38_RS07590 (RFF38_07590) - 1593286..1595322 (+) 2037 WP_010907417.1 integrase -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18685.73 Da        Isoelectric Point: 5.3353

>NTDB_id=875401 RFF38_RS07575 WP_083004547.1 1589846..1590346(+) (ssb) [Pasteurella multocida strain Past9]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGVQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=875401 RFF38_RS07575 WP_083004547.1 1589846..1590346(+) (ssb) [Pasteurella multocida strain Past9]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGTGTCGCCACAAGCGAAAGTTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGCCGTCAAGCTGAAGTAGCCGGAGAATACCTCCGTAAAGGTTCAAAGGTGTATGTAGAAGGC
CGTCTAAAAACACGCAAATGGCAAGATCAAAACGGGCAAGATCGTTACACCACGGAAATTCAAGGCGACGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCCCCACAAACCGCTGCGCCACAATACAATGCCCCAACAG
GTGGCTACGGCGTACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCCCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.568

100

0.753
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

43.503

100

0.464
  ssb Neisseria gonorrhoeae MS11

43.503

100

0.464