Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RFF10_RS06625 Genome accession   NZ_CP133636
Coordinates   1447608..1448108 (+) Length   166 a.a.
NCBI ID   WP_005725039.1    Uniprot ID   A0A379BD60
Organism   Pasteurella multocida strain Past29     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1442608..1453108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFF10_RS06610 (RFF10_06610) rlmB 1443151..1443888 (+) 738 WP_005725044.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RFF10_RS06615 (RFF10_06615) sodC 1443974..1444534 (-) 561 WP_064964961.1 superoxide dismutase family protein -
  RFF10_RS06620 (RFF10_06620) uvrA 1444605..1447436 (-) 2832 WP_083004550.1 excinuclease ABC subunit UvrA -
  RFF10_RS06625 (RFF10_06625) ssb 1447608..1448108 (+) 501 WP_005725039.1 single-stranded DNA-binding protein Machinery gene
  RFF10_RS06630 (RFF10_06630) - 1448259..1449539 (+) 1281 WP_083004546.1 site-specific integrase -
  RFF10_RS06635 (RFF10_06635) - 1449526..1451046 (+) 1521 WP_172452382.1 site-specific integrase -
  RFF10_RS06640 (RFF10_06640) - 1451049..1453085 (+) 2037 WP_250249344.1 integrase -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18657.68 Da        Isoelectric Point: 5.3353

>NTDB_id=875377 RFF10_RS06625 WP_005725039.1 1447608..1448108(+) (ssb) [Pasteurella multocida strain Past29]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=875377 RFF10_RS06625 WP_005725039.1 1447608..1448108(+) (ssb) [Pasteurella multocida strain Past29]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGTGTCGCCACAAGCGAAAGTTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGCCGTCAAGCTGAAGTAGCCGGAGAATACCTCCGTAAAGGTTCAAAGGTGTATGTAGAAGGC
CGTCTAAAAACACGCAAATGGCAAGATCAAAACGGGCAAGATCGTTACACCACGGAAATTCAAGGCGATGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A379BD60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47