Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RFF39_RS07005 Genome accession   NZ_CP133634
Coordinates   1494332..1494832 (+) Length   166 a.a.
NCBI ID   WP_005725039.1    Uniprot ID   A0A379BD60
Organism   Pasteurella multocida strain Past33     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1489332..1499832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFF39_RS06990 (RFF39_06990) rlmB 1489876..1490613 (+) 738 WP_005725044.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RFF39_RS06995 (RFF39_06995) sodC 1490698..1491258 (-) 561 WP_005725042.1 superoxide dismutase family protein -
  RFF39_RS07000 (RFF39_07000) uvrA 1491329..1494160 (-) 2832 WP_323997323.1 excinuclease ABC subunit UvrA -
  RFF39_RS07005 (RFF39_07005) ssb 1494332..1494832 (+) 501 WP_005725039.1 single-stranded DNA-binding protein Machinery gene
  RFF39_RS07010 (RFF39_07010) folD 1495339..1496193 (-) 855 WP_005725034.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  RFF39_RS07025 (RFF39_07025) - 1496966..1498201 (+) 1236 WP_014326375.1 YadA family autotransporter adhesin -
  RFF39_RS07030 (RFF39_07030) - 1498392..1498811 (+) 420 WP_014326376.1 DUF417 family protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18657.68 Da        Isoelectric Point: 5.3353

>NTDB_id=875355 RFF39_RS07005 WP_005725039.1 1494332..1494832(+) (ssb) [Pasteurella multocida strain Past33]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=875355 RFF39_RS07005 WP_005725039.1 1494332..1494832(+) (ssb) [Pasteurella multocida strain Past33]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGCCGTCAAGCTGAAGTAGCCGGAGAATACCTCCGTAAAGGTTCAAAGGTGTATGTAGAAGGC
CGTCTAAAAACACGCAAATGGCAAGATCAAAACGGGCAAGATCGTTACACCACGGAAATTCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A379BD60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47