Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LTWDN19_RS06005 Genome accession   NZ_AP024685
Coordinates   1164421..1164933 (+) Length   170 a.a.
NCBI ID   WP_004265848.1    Uniprot ID   A0A0B2XPH3
Organism   Latilactobacillus curvatus strain WDN19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1156447..1175006 1164421..1164933 within 0


Gene organization within MGE regions


Location: 1156447..1175006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTWDN19_RS05975 (LTWDN19_11980) dnaN 1156447..1157586 (+) 1140 WP_221276265.1 DNA polymerase III subunit beta -
  LTWDN19_RS05980 (LTWDN19_11990) yaaA 1157824..1158051 (+) 228 WP_039098086.1 S4 domain-containing protein YaaA -
  LTWDN19_RS05985 (LTWDN19_12000) recF 1158058..1159191 (+) 1134 WP_039098085.1 DNA replication/repair protein RecF -
  LTWDN19_RS05990 (LTWDN19_12010) gyrB 1159237..1161198 (+) 1962 WP_039098095.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  LTWDN19_RS05995 (LTWDN19_12020) gyrA 1161257..1163842 (+) 2586 WP_039098084.1 DNA gyrase subunit A -
  LTWDN19_RS06000 (LTWDN19_12030) rpsF 1164085..1164381 (+) 297 WP_004265809.1 30S ribosomal protein S6 -
  LTWDN19_RS06005 (LTWDN19_12040) ssb 1164421..1164933 (+) 513 WP_004265848.1 single-stranded DNA-binding protein Machinery gene
  LTWDN19_RS06010 (LTWDN19_12050) rpsR 1164964..1165203 (+) 240 WP_004265822.1 30S ribosomal protein S18 -
  LTWDN19_RS06015 (LTWDN19_12060) - 1165420..1167450 (+) 2031 WP_221276266.1 DHH family phosphoesterase -
  LTWDN19_RS06020 (LTWDN19_12070) rplI 1167472..1167924 (+) 453 WP_039098082.1 50S ribosomal protein L9 -
  LTWDN19_RS06025 (LTWDN19_12080) dnaB 1168069..1169472 (+) 1404 WP_172821848.1 replicative DNA helicase -
  LTWDN19_RS06030 (LTWDN19_12090) - 1169792..1170721 (+) 930 WP_221276267.1 IS30-like element ISLpl1 family transposase -
  LTWDN19_RS06035 (LTWDN19_12100) - 1170894..1172240 (-) 1347 WP_221276268.1 nucleobase:cation symporter-2 family protein -
  LTWDN19_RS06040 (LTWDN19_12110) rsmG 1172608..1173348 (+) 741 WP_064776763.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LTWDN19_RS06045 (LTWDN19_12120) noc 1173348..1174226 (+) 879 WP_004265810.1 nucleoid occlusion protein -
  LTWDN19_RS06050 (LTWDN19_12130) - 1174239..1175006 (+) 768 WP_221276269.1 ParA family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18621.16 Da        Isoelectric Point: 4.6856

>NTDB_id=87534 LTWDN19_RS06005 WP_004265848.1 1164421..1164933(+) (ssb) [Latilactobacillus curvatus strain WDN19]
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSIAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNNNQSNGSQQSGFTSPQQSGNPSAANNTQADPFANNGQA
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=87534 LTWDN19_RS06005 WP_004265848.1 1164421..1164933(+) (ssb) [Latilactobacillus curvatus strain WDN19]
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGTGCTGCTGTTGG
GACTTTCTCAATCGCAGTGAACCGTCAATTCACGAATGCCAATGGTGATCGTGAAGCAGACTTTATCAACTGTGTCATCT
GGCGTAAATCAGCGGAAAATTTCGCTAATTTCACTAAGAAAGGCTCACTAGTCGGAGTTGATGGCCGTCTACAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACCGAAGTGGTCGTTGATAACTTCTCATTGTTAGAATCACGGAC
AACAACGGAGCAACGGCAAGGGGATGGCGCAAGCCAAAACTTTAACAACAATCAAAGCAATGGTAGCCAACAATCTGGAT
TTACCAGCCCTCAACAATCGGGTAATCCATCAGCTGCAAATAACACTCAAGCCGATCCATTTGCAAATAATGGTCAAGCA
ATTGATATTTCAGATGATGATTTACCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B2XPH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

97.059

100

0.971
  ssbA Bacillus subtilis subsp. subtilis str. 168

56

100

0.576
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

62.353

0.371
  ssb Glaesserella parasuis strain SC1401

33.155

100

0.365

Multiple sequence alignment