Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RFF25_RS06685 Genome accession   NZ_CP133633
Coordinates   1444435..1444935 (+) Length   166 a.a.
NCBI ID   WP_083004547.1    Uniprot ID   -
Organism   Pasteurella multocida strain Pm1618     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1439435..1449935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFF25_RS06670 (RFF25_06665) rlmB 1439978..1440715 (+) 738 WP_083004553.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RFF25_RS06675 (RFF25_06670) sodC 1440801..1441361 (-) 561 WP_064964961.1 superoxide dismutase family protein -
  RFF25_RS06680 (RFF25_06675) uvrA 1441432..1444263 (-) 2832 WP_250190754.1 excinuclease ABC subunit UvrA -
  RFF25_RS06685 (RFF25_06680) ssb 1444435..1444935 (+) 501 WP_083004547.1 single-stranded DNA-binding protein Machinery gene
  RFF25_RS06690 (RFF25_06685) - 1445086..1446366 (+) 1281 WP_083004546.1 site-specific integrase -
  RFF25_RS06695 (RFF25_06690) - 1446353..1447039 (+) 687 WP_250190755.1 hypothetical protein -
  RFF25_RS06700 (RFF25_06695) - 1447011..1447874 (+) 864 WP_250190756.1 tyrosine-type recombinase/integrase -
  RFF25_RS06705 (RFF25_06700) - 1447877..1449913 (+) 2037 WP_010907417.1 integrase -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18685.73 Da        Isoelectric Point: 5.3353

>NTDB_id=875333 RFF25_RS06685 WP_083004547.1 1444435..1444935(+) (ssb) [Pasteurella multocida strain Pm1618]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGVQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=875333 RFF25_RS06685 WP_083004547.1 1444435..1444935(+) (ssb) [Pasteurella multocida strain Pm1618]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGTGTCGCCACAAGCGAAAGTTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTAGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACTACCGAAATCCAAGGCGACGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTGCGCCACAATACAATGCCCCAACAG
GTGGCTACGGCGTACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCCCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.568

100

0.753
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

43.503

100

0.464
  ssb Neisseria gonorrhoeae MS11

43.503

100

0.464