Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RE468_RS12580 Genome accession   NZ_CP133598
Coordinates   2537488..2537943 (+) Length   151 a.a.
NCBI ID   WP_004870790.1    Uniprot ID   -
Organism   MAG: Acidithiobacillus caldus isolate BR_03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2532488..2542943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE468_RS12565 (RE468_12565) - 2533008..2534027 (+) 1020 WP_004870784.1 DNA-directed RNA polymerase subunit alpha -
  RE468_RS12570 (RE468_12570) rplQ 2534069..2534455 (+) 387 WP_004870787.1 50S ribosomal protein L17 -
  RE468_RS12575 (RE468_12575) uvrA 2534589..2537405 (-) 2817 WP_004870788.1 excinuclease ABC subunit UvrA -
  RE468_RS12580 (RE468_12580) ssb 2537488..2537943 (+) 456 WP_004870790.1 single-stranded DNA-binding protein Machinery gene
  RE468_RS12585 (RE468_12585) - 2537954..2538187 (-) 234 WP_004870811.1 phage integrase N-terminal SAM-like domain-containing protein -
  RE468_RS12590 (RE468_12590) - 2538353..2538745 (+) 393 WP_004870812.1 carboxymuconolactone decarboxylase family protein -
  RE468_RS12595 (RE468_12595) pmbA 2538999..2540342 (-) 1344 WP_070113650.1 metalloprotease PmbA -
  RE468_RS12600 (RE468_12600) - 2540414..2541637 (-) 1224 WP_004870814.1 tRNA nucleotidyltransferase -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16697.45 Da        Isoelectric Point: 5.3376

>NTDB_id=875255 RE468_RS12580 WP_004870790.1 2537488..2537943(+) (ssb) [MAG: Acidithiobacillus caldus isolate BR_03]
MAGVNRVILLGHLGRDPEMRYQPSGGAIATLNLATSETYKDREGNRQERTEWHRVVFFGRPAEIAGEYLRKGSMAYVEGR
LQTRKWTDKEGQERYTTEVVGDRLQLVGGRGGGGANLDEDGPRSSAGAGSGRSNREMPPVPQEDFDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=875255 RE468_RS12580 WP_004870790.1 2537488..2537943(+) (ssb) [MAG: Acidithiobacillus caldus isolate BR_03]
ATGGCGGGAGTGAATCGGGTCATCTTGTTGGGGCACCTGGGCCGTGATCCGGAGATGCGCTATCAGCCCAGTGGTGGCGC
CATTGCCACCCTGAATTTGGCGACATCCGAGACCTATAAGGATCGCGAGGGCAATCGACAAGAGCGCACCGAGTGGCATC
GCGTGGTGTTCTTTGGTCGGCCGGCGGAGATTGCCGGCGAGTATCTGCGCAAAGGAAGCATGGCCTATGTCGAGGGGCGC
TTGCAGACCCGCAAGTGGACGGACAAGGAGGGCCAGGAGCGCTACACCACCGAGGTGGTGGGCGACCGCCTGCAATTGGT
CGGCGGGCGTGGCGGCGGCGGGGCCAACCTGGACGAGGATGGCCCCCGTAGCAGCGCCGGTGCCGGTTCTGGCCGTAGCA
ATCGCGAGATGCCGCCTGTTCCGCAGGAAGACTTTGACGACGACATTCCTTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.667

100

0.556
  ssb Vibrio cholerae strain A1552

47.977

100

0.55
  ssb Neisseria gonorrhoeae MS11

42.442

100

0.483
  ssb Neisseria meningitidis MC58

41.86

100

0.477