Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LTWDN19_RS03740 Genome accession   NZ_AP024685
Coordinates   707734..709065 (-) Length   443 a.a.
NCBI ID   WP_035186301.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain WDN19     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 702734..714065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTWDN19_RS03725 (LTWDN19_07680) secA 703797..706160 (-) 2364 WP_004270228.1 preprotein translocase subunit SecA -
  LTWDN19_RS03730 (LTWDN19_07690) hpf 706389..706934 (-) 546 WP_004270226.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  LTWDN19_RS03735 (LTWDN19_07700) comFC 707060..707590 (-) 531 WP_155275694.1 ComF family protein Machinery gene
  LTWDN19_RS03740 (LTWDN19_07710) comFA 707734..709065 (-) 1332 WP_035186301.1 DEAD/DEAH box helicase Machinery gene
  LTWDN19_RS03745 (LTWDN19_07720) - 709125..709787 (+) 663 WP_039099348.1 YigZ family protein -
  LTWDN19_RS03750 (LTWDN19_07730) - 709812..710900 (-) 1089 WP_004270225.1 glycosyltransferase family 4 protein -
  LTWDN19_RS03755 (LTWDN19_07740) hemH 711010..711723 (-) 714 WP_311732756.1 ferrochelatase -
  LTWDN19_RS03760 (LTWDN19_07750) rny 711957..713519 (-) 1563 WP_004270250.1 ribonuclease Y -

Sequence

Protein


Download         Length: 443 a.a.        Molecular weight: 49676.82 Da        Isoelectric Point: 9.4775

>NTDB_id=87524 LTWDN19_RS03740 WP_035186301.1 707734..709065(-) (comFA) [Latilactobacillus curvatus strain WDN19]
MAKQLAYGRQWSATQLSTVMNNYSLPQIKQRLAFQIVNQRLVCQRCGQVVKEQARLPDGRYYCAACLTFGRLVEGDQLVY
VPECNLFESIVEPLTWSGTLTPFQAQAAKQIVAVITKQQRHVLTAVTGAGKTEMLFQGIATALANGQRVCVAAPRVAVCL
ELYPRLQAAFANTPIMLMHGEQTAPYRYTPLVVCTTHQLFKFYQAFDTVIVDEVDAFPFVNNPQLEMAVKQACKPCCALI
YLTATPTVKLRHAINTGDLTGSELPIRFHGHLLPEPHCYPLFTWRRSVKRHQLPSVMRNLLRKCLQEQRLLLFVPQVRDL
EAVQQSVVRALPHITVNTVHAGDPNQLDKIAAFRAGCGDVLITTTVLERGVTFKNIAVFVLGAEHVVFTESVLVQIAGRA
GRQQEHAANPVYFFYADYTVAIQRACQQIKRQNRKGRRLQSTV

Nucleotide


Download         Length: 1332 bp        

>NTDB_id=87524 LTWDN19_RS03740 WP_035186301.1 707734..709065(-) (comFA) [Latilactobacillus curvatus strain WDN19]
ATGGCAAAACAACTTGCTTATGGTCGTCAGTGGAGTGCCACCCAATTGAGTACCGTTATGAATAATTATAGTTTACCACA
GATTAAACAGCGACTAGCGTTTCAAATAGTTAATCAGCGTCTGGTATGTCAACGGTGTGGACAAGTGGTGAAAGAGCAAG
CTCGCTTACCTGATGGTCGGTATTATTGTGCTGCTTGCTTGACCTTTGGGCGGTTAGTGGAAGGGGATCAGTTGGTTTAC
GTGCCTGAATGCAATCTGTTTGAGTCGATCGTAGAACCGCTAACTTGGTCGGGGACACTAACCCCTTTTCAAGCACAAGC
CGCAAAGCAGATTGTTGCGGTCATTACCAAGCAACAACGCCATGTCTTAACTGCAGTGACCGGTGCTGGTAAAACTGAGA
TGTTATTTCAAGGCATTGCGACGGCTTTAGCTAATGGGCAGCGTGTGTGTGTTGCTGCGCCGCGGGTGGCGGTTTGTTTA
GAACTCTATCCGCGCTTGCAAGCAGCGTTTGCTAACACACCAATCATGCTGATGCATGGGGAACAGACTGCGCCTTACCG
GTATACGCCGTTAGTTGTTTGTACAACCCATCAGTTATTTAAGTTTTATCAGGCATTTGACACTGTCATTGTCGATGAGG
TTGATGCGTTCCCATTTGTCAATAATCCCCAGCTTGAGATGGCTGTTAAACAGGCGTGTAAGCCATGCTGTGCATTGATC
TATCTGACGGCGACACCAACTGTAAAGTTGCGCCATGCGATTAATACAGGGGATTTAACGGGTAGTGAGCTACCAATTCG
CTTTCATGGTCACTTATTACCTGAACCGCATTGCTATCCCTTGTTTACGTGGCGGCGTTCAGTTAAACGGCATCAGTTAC
CATCCGTGATGCGTAACTTACTCAGGAAGTGTCTTCAAGAACAACGCTTATTATTATTTGTGCCACAGGTAAGGGATTTA
GAGGCGGTTCAGCAGAGCGTTGTTCGGGCATTGCCACACATTACAGTGAACACGGTACATGCTGGCGATCCTAATCAATT
AGACAAGATAGCGGCCTTTAGAGCAGGATGCGGGGACGTGCTGATTACGACGACAGTTCTAGAACGAGGCGTAACGTTTA
AAAATATTGCGGTGTTTGTTCTTGGTGCAGAACACGTGGTCTTCACTGAATCAGTGCTTGTACAGATTGCTGGCCGAGCC
GGACGACAGCAAGAGCATGCTGCCAATCCGGTTTATTTTTTCTACGCGGATTACACGGTCGCTATTCAGCGTGCGTGTCA
ACAAATTAAACGACAAAATCGAAAAGGACGGCGATTACAATCCACTGTTTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(297-403)

Type III restriction enzyme, res subunit (ResIII)

(100-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Latilactobacillus sakei subsp. sakei 23K

65.682

99.323

0.652
  comFA/cflA Streptococcus mitis NCTC 12261

40.796

90.745

0.37
  comFA/cflA Streptococcus pneumoniae TIGR4

40.594

91.196

0.37
  comFA/cflA Streptococcus pneumoniae Rx1

40.347

91.196

0.368
  comFA/cflA Streptococcus pneumoniae D39

40.347

91.196

0.368
  comFA/cflA Streptococcus pneumoniae R6

40.347

91.196

0.368
  comFA/cflA Streptococcus mitis SK321

40.099

91.196

0.366
  comFA Bacillus subtilis subsp. subtilis str. 168

38.554

93.679

0.361

Multiple sequence alignment