Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LTWDN19_RS03735 Genome accession   NZ_AP024685
Coordinates   707060..707590 (-) Length   176 a.a.
NCBI ID   WP_155275694.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain WDN19     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 702060..712590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTWDN19_RS03725 (LTWDN19_07680) secA 703797..706160 (-) 2364 WP_004270228.1 preprotein translocase subunit SecA -
  LTWDN19_RS03730 (LTWDN19_07690) hpf 706389..706934 (-) 546 WP_004270226.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  LTWDN19_RS03735 (LTWDN19_07700) comFC 707060..707590 (-) 531 WP_155275694.1 ComF family protein Machinery gene
  LTWDN19_RS03740 (LTWDN19_07710) comFA 707734..709065 (-) 1332 WP_035186301.1 DEAD/DEAH box helicase Machinery gene
  LTWDN19_RS03745 (LTWDN19_07720) - 709125..709787 (+) 663 WP_039099348.1 YigZ family protein -
  LTWDN19_RS03750 (LTWDN19_07730) - 709812..710900 (-) 1089 WP_004270225.1 glycosyltransferase family 4 protein -
  LTWDN19_RS03755 (LTWDN19_07740) hemH 711010..711723 (-) 714 WP_311732756.1 ferrochelatase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 20695.83 Da        Isoelectric Point: 9.7337

>NTDB_id=87523 LTWDN19_RS03735 WP_155275694.1 707060..707590(-) (comFC) [Latilactobacillus curvatus strain WDN19]
MTTQGVCPDCQRWQQLYPGEQFTNRALLTYNEPMQQYFQRYKGQGDYRLRHVFQRLIRENFPVQRQTAYIPVPTDPTHLQ
SRGFNPVVGLYEDCFPLTPLLQKLPTEKGQAQKNRAERLATPQFFKCAQNMLLGSKVQQLILLDDIYTTGRTLWHAQQCL
RKRYQTLPIHAITLVH

Nucleotide


Download         Length: 531 bp        

>NTDB_id=87523 LTWDN19_RS03735 WP_155275694.1 707060..707590(-) (comFC) [Latilactobacillus curvatus strain WDN19]
ATGACAACCCAGGGGGTGTGTCCGGATTGCCAGAGATGGCAGCAACTGTATCCAGGCGAACAATTTACTAATCGAGCGTT
GTTAACATACAACGAACCAATGCAACAGTATTTTCAACGCTATAAGGGACAGGGGGATTATCGATTACGTCACGTATTTC
AACGGCTGATTCGAGAAAATTTTCCTGTGCAACGGCAAACGGCGTATATCCCAGTCCCGACTGATCCAACACATTTGCAA
AGCCGCGGATTCAATCCGGTGGTAGGCTTATACGAGGACTGTTTTCCACTGACCCCATTGTTGCAGAAGCTACCAACTGA
AAAAGGACAAGCACAAAAAAATCGTGCAGAGCGCTTAGCAACGCCGCAATTTTTTAAATGCGCGCAGAACATGCTGTTGG
GTTCCAAGGTGCAACAGTTAATTTTGTTGGATGATATTTATACCACTGGGCGCACGTTATGGCATGCTCAGCAGTGTCTC
CGCAAGCGATACCAAACGCTGCCAATTCACGCAATTACTTTAGTCCACTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Latilactobacillus sakei subsp. sakei 23K

65.493

80.682

0.528

Multiple sequence alignment