Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RE735_RS00645 Genome accession   NZ_CP133585
Coordinates   123275..123787 (+) Length   170 a.a.
NCBI ID   WP_309174177.1    Uniprot ID   -
Organism   Bacillus aerius strain NEB1378     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 118275..128787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE735_RS00620 (RE735_00620) - 119280..119690 (-) 411 WP_309174173.1 hypothetical protein -
  RE735_RS00625 (RE735_00625) - 119706..121025 (-) 1320 WP_309174174.1 hydrolase -
  RE735_RS00630 (RE735_00630) - 121320..121526 (+) 207 WP_309174175.1 DUF951 domain-containing protein -
  RE735_RS00635 (RE735_00635) ychF 121742..122842 (+) 1101 WP_309174176.1 redox-regulated ATPase YchF -
  RE735_RS00640 (RE735_00640) rpsF 122951..123238 (+) 288 WP_008347557.1 30S ribosomal protein S6 -
  RE735_RS00645 (RE735_00645) ssbA 123275..123787 (+) 513 WP_309174177.1 single-stranded DNA-binding protein SsbA Machinery gene
  RE735_RS00650 (RE735_00650) rpsR 123829..124068 (+) 240 WP_008347556.1 30S ribosomal protein S18 -
  RE735_RS00655 (RE735_00655) - 124218..124608 (+) 391 Protein_115 glycine betaine ABC transporter substrate-binding protein -
  RE735_RS00660 (RE735_00660) - 124780..125751 (+) 972 WP_309174178.1 ring-cleaving dioxygenase -
  RE735_RS00665 (RE735_00665) - 125748..126359 (+) 612 WP_024718443.1 alpha/beta hydrolase -
  RE735_RS00670 (RE735_00670) wrbA 126419..127042 (+) 624 WP_045034926.1 NAD(P)H:quinone oxidoreductase -
  RE735_RS00675 (RE735_00675) - 127091..127984 (-) 894 Protein_119 catalase -
  RE735_RS00680 (RE735_00680) - 127985..128455 (+) 471 Protein_120 RsiV family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18678.26 Da        Isoelectric Point: 4.6109

>NTDB_id=875085 RE735_RS00645 WP_309174177.1 123275..123787(+) (ssbA) [Bacillus aerius strain NEB1378]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSAGAGSGGYSGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFNDDPFANDGKP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=875085 RE735_RS00645 WP_309174177.1 123275..123787(+) (ssbA) [Bacillus aerius strain NEB1378]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGCTTGCAGACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAG
CGCCGGTGCTGGTTCAGGTGGATACAGCGGCGGTAGCCAAAACGATCAGAATCCATTTGGAAATGAACCAAGTCAAAATC
CTTATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTCAATGATGACCCATTTGCGAATGATGGTAAACCG
ATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

87.791

100

0.888
  ssb Latilactobacillus sakei subsp. sakei 23K

60.234

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

62.353

0.4
  ssb Glaesserella parasuis strain SC1401

37.079

100

0.388